Browse Element(s) Details


Os.9756.1.S1_a_at

Description gb:AK068167.1
DB_XREF= gi:32978185
TID=Os.9756.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9756 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140I16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135N12, full insert sequence.
FL= gb:AK068167.1 gb:AK062247.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0526011/11phosphoglycerate mutase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05210OsAffx.24267.1.S1_at1/1111+2295691..2302619retrotransposon protein, putative, unclassified
LOC_Os11g05220Os.14919.1.S1_at5/1111+2306396..2312375transposon protein, putative, Mutator sub-class
LOC_Os11g05220OsAffx.29313.1.S1_at1/1111+2306396..2312375transposon protein, putative, Mutator sub-class
LOC_Os11g05220Os.56216.1.S1_at1/1111+2306396..2312375transposon protein, putative, Mutator sub-class
LOC_Os11g05230OsAffx.30825.1.S1_at11/1111+2314669..2315574Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g05240OsAffx.30826.1.S1_at11/1111+2317594..2319117PAN domain containing protein
LOC_Os11g05250NANA11+2320717..2323376hypothetical protein
LOC_Os11g05260Os.9756.1.S1_a_at11/1111+2325827..2329111phosphoglycerate mutase family protein, expressed
LOC_Os11g05270OsAffx.18683.1.S1_at11/1111+2331554..2332567hypothetical protein
LOC_Os11g05280Os.55754.1.S1_x_at1/1111+2335605..2336621hypothetical protein
LOC_Os11g05280Os.21883.1.S1_at1/1111+2335605..2336621hypothetical protein
LOC_Os11g05290Os.15841.1.S1_a_at11/1111+2339479..2340541expressed protein
LOC_Os11g05300OsAffx.18684.1.S1_at11/1111+2341589..2343975Zinc finger, C3HC4 type family protein
LOC_Os11g05310NANA11+2347198..2347443hypothetical protein
LOC_Os11g05320OsAffx.31595.1.S1_at11/1111+2352335..2356702Protein kinase domain containing protein, expressed
LOC_Os11g05320OsAffx.31595.1.S1_x_at11/1111+2352335..2356702Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9756.1.S1_a_at--1081--1411Chr11:2328520..2328544 (25 bp)
AGAAATAGCTCAGTCTGGGTGGCTG
LOC_Os11g05260
Os.9756.1.S1_a_at--920--8331Chr11:2328540..2328564 (25 bp)
GGCTGGGCAGCATGGAATACAAAAC
LOC_Os11g05260
Os.9756.1.S1_a_at--583--5431Chr11:2328580..2328604 (25 bp)
GAACCAGTCGAAAGCTGCATGGCAA
LOC_Os11g05260
Os.9756.1.S1_a_at--163--5211Chr11:2328642..2328666 (25 bp)
GAATTCTGGTGGTCGTAGGACATCC
LOC_Os11g05260
Os.9756.1.S1_a_at--1137--8111Chr11:2328659..2328683 (25 bp)
GGACATCCGGGTATAAATCTAGCAT
LOC_Os11g05260
Os.9756.1.S1_a_at--2--9471Chr11:2328697..2328721 (25 bp)
TCTGGATTTAACGATGGACTACATG
LOC_Os11g05260
Os.9756.1.S1_a_at--360--8131Chr11:2328712..2328736 (25 bp)
GGACTACATGTCATCTTTTCATCTA
LOC_Os11g05260
Os.9756.1.S1_a_at--89--4971Chr11:2328747..2328771 (25 bp)
GCATCAGTGTGATCGATTTCCCAGA
LOC_Os11g05260
Os.9756.1.S1_a_at--84--9031Chr11:2328800..2328824 (25 bp)
TGCACAAATTACACAGCCCATCTAG
LOC_Os11g05260
Os.9756.1.S1_a_at--59--7091Chr11:2328832..2328856 (25 bp)
GTCAATACCTATTACCAGGACCATG
LOC_Os11g05260
Os.9756.1.S1_a_at--746--8991Chr11:2328865..2328889 (25 bp)
TGAAGAGTTCTAACTTCCTGCAAGG
LOC_Os11g05260
Target Sequence 
AGAAATAGCTCAGTCTGGGTGGCTGGGCAGCATGGAATACAAAACTCTGGAGGGGCTATGGAACCAGTCGAAAGCTGCAT
GGCAAGCCTTGCTAAATGAGTTGCAAGATGATACTTCAGAAAGAATTCTGGTGGTCGTAGGACATCCGGGTATAAATCTA
GCATTGATTTGCAGGTGTCTGGATTTAACGATGGACTACATGTCATCTTTTCATCTAGACGATGGCAGCATCAGTGTGAT
CGATTTCCCAGATGGACCAAAAGGAAGAGGTGTNGTCAGATGCACAAATTACACAGCCCATCTAGGAAGATGGTCAATAC
CTATTACCAGGACCATGGAAACTGATGAAGAGTTCTAACTTCCTGCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9756.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis