Browse Element(s) Details


OsAffx.24267.1.S1_at

Description tigr:9630.m01433
TID=OsAffx.24267.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g084002/11retrotransposon protein, putative, unclassified
LOC_Os11g052101/11retrotransposon protein, putative, unclassified
LOC_Os11g176301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08370Os.24830.1.S1_at1/114+4457786..4460656Leucine Rich Repeat family protein
LOC_Os04g08390Os.24830.1.S1_at11/114+4472144..4477245Leucine Rich Repeat family protein, expressed
LOC_Os04g08400OsAffx.24267.1.S1_at2/114+4484933..4490885retrotransposon protein, putative, unclassified
LOC_Os04g08410Os.26756.1.S1_at11/114+4496116..4500992expressed protein
LOC_Os04g08410Os.26756.1.S2_at10/114+4496116..4500992expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24267.1.S1_at--373--7811Chr02:8551411..8551430 (20 bp)
GGTCTGCTCTGCCAAAAGGTTCTAT
NONE
OsAffx.24267.1.S1_at--402--315Chr11:9810619..9810642 (24 bp)
ATACCGGCTTGCTAAGTGGGACATC
LOC_Os11g17630
OsAffx.24267.1.S1_at--826--8133Chr05:12846889..12846913 (25 bp)
GGACATCATCTGTCGTCCCAAAGAT
NONE
OsAffx.24267.1.S1_at--714--8333Chr04:4489641..4489665 (25 bp)
GGCTGGGAATTCATGACCTCGAGGT
LOC_Os04g08400
OsAffx.24267.1.S1_at--728--3491NONE
CATGACCTCGAGGTTATTACTCTAG
NONE
OsAffx.24267.1.S1_at--1009--10471Chr02:8549703..8549727 (25 bp)
TTACTCTAGTTACCCAGTGGCTGCG
NONE
OsAffx.24267.1.S1_at--856--2391Chr02:8549165..8549425 (25 bp)
AAAAAGATCGGCAATGGCTGTAAGC
NONE
OsAffx.24267.1.S1_at--1053--5672Chr08:13679792..13679863 (25 bp)
GACATTGTTGTCCACAAGTTAGTAT
NONE
OsAffx.24267.1.S1_at--885--10231Chr02:8548728..8548752 (25 bp)
TATTGGCATTGCTCTGGGATTATTG
NONE
OsAffx.24267.1.S1_at--553--3071Chr02:8548242..8548266 (25 bp)
AATAAAGTGGGCACAGTACAGTTCA
NONE
OsAffx.24267.1.S1_at--879--3131Chr02:8548074..8548216 (25 bp)
AATTCGGCAAGGCTTATCACCTAGA
NONE
Target Sequence 
GGTCTGCTCTGCCAAAAGGTTCTATTGGCAAGGGGATGGCCATAAGAAAAAATACCGGCTTGCTAAGTGGGACATCATCT
GTCGTCCCAAAGATCAAAGGGGGCTGGGAATTCATGACCTCGAGGTTATTACTCTAGTTACCCAGTGGCTGCGTACCTGG
GCTATCCTCCACAAACCGGGATTGCGGGATACTATTGCGGTGAGGCCGGGGGTGAGCTCAGTTGAAATGTATCATCTTGG
TGTATTTGACCGAGTCTTAATAAAGCTTCCATTATCTAAAAAAAAGATCGGCAATGGCTGTAAGCATCGGCAGATTCGAT
TCACTGAGAAGTTCTTCCTCAGTGACATTGTTGTCCACAAGTTAGTATTATATTGGCATTGCTCTGGGATTATTGAAGCA
CAACAATTAGCTGGGAGTGCAACAATTCCCTGTAACCAAAAGAATAAAGTGGGCACAGTACAGTTCAAGAACAGGTTCTT
CTCCACGAAAATAATTCGGCAAGGCTTATCACCTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis