Browse Element(s) Details


Os.24830.1.S1_at

Description gb:AK101349.1
DB_XREF= gi:32986558
TID=Os.24830.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.24830 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034N04, full insert sequence.
FL= gb:AK101349.1 gb:AK107133.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0839011/11Leucine Rich Repeat family protein, expressed
LOC_Os04g083701/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08350Os.353.1.S1_at11/114+4444554..4448961Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os04g08360NANA4+4450190..4450696expressed protein
LOC_Os04g08370Os.24830.1.S1_at1/114+4457786..4460656Leucine Rich Repeat family protein
LOC_Os04g08390Os.24830.1.S1_at11/114+4472144..4477245Leucine Rich Repeat family protein, expressed
LOC_Os04g08400OsAffx.24267.1.S1_at2/114+4484933..4490885retrotransposon protein, putative, unclassified
LOC_Os04g08410Os.26756.1.S1_at11/114+4496116..4500992expressed protein
LOC_Os04g08410Os.26756.1.S2_at10/114+4496116..4500992expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24830.1.S1_at--1100--3792Chr04:4472915..4472939 (25 bp)
CTCGCCACTCGATGTACTACAAGAA
LOC_Os04g08390
Os.24830.1.S1_at--1146--9831Chr04:4472898..4472922 (25 bp)
TACAAGAAGGCTCTACCCAGATGCT
LOC_Os04g08390
Os.24830.1.S1_at--275--9291Chr04:4472867..4472891 (25 bp)
TCCGGTGAGGCGACATGCAGACGCT
LOC_Os04g08390
Os.24830.1.S1_at--132--9051Chr04:4472852..4472876 (25 bp)
TGCAGACGCTGTATCAACTGCTGCT
LOC_Os04g08390
Os.24830.1.S1_at--457--2551Chr04:4472841..4472861 (21 bp)
AACTGCTGCTCACTTGTTAAGATTT
LOC_Os04g08390
Os.24830.1.S1_at--1121--10632Chr04:4472455..4472479 (25 bp)
TTCCGTCTCGCTGCAGTGGTTTCGA
LOC_Os04g08390
Os.24830.1.S1_at--74--3472Chr04:4472442..4472466 (25 bp)
CAGTGGTTTCGAGTGTTTGCTTGTT
LOC_Os04g08390
Os.24830.1.S1_at--730--32Chr04:4472404..4472428 (25 bp)
ATTGGTGCATCATGTGCTTGCAGCA
LOC_Os04g08390
Os.24830.1.S1_at--234--3152Chr04:4472333..4472357 (25 bp)
AATTAATTCGCGTGTGTGTCTCTCA
LOC_Os04g08390
Os.24830.1.S1_at--796--6112Chr04:4472305..4472329 (25 bp)
GAGTGACGCAGAACCATCTGTGTGT
LOC_Os04g08390
Os.24830.1.S1_at--726--1232Chr04:4472210..4472234 (25 bp)
AGTTCCCAGAAGTTCATGGTGTGAC
LOC_Os04g08390
Target Sequence 
CTCGCCACTCGATGTACTACAAGAAGGCTCTACCCAGATGCTCTCTTNTCCGGTGAGGCGACATGCAGACGCTGTATCAA
CTGCTGCTCACTTGTTAAGATTTACTGATGGATCAACCAAGNTGTCTGCNTGCTTTNTTCCGTCTCGCTGCAGTGGTTTC
GAGTGTTTGCTTGTTTTNTGAAGAATAAATTGGTGCATCATGTGCTTGCAGCANGCACCTNTGAGTTGTATANATTGTTG
TGTGCTTGCATACTAAGTTAATTAATTCGCGTGTGTGTCTCTCAGGGGAGTGACGCAGAACCATCTGTGTGTGTGNNGAT
TTGTTGATGATGTATGTGCTTGAAATAANAGGGTNTGATGGGCCTNTGTGGTGTGCCTACCNCTAGTTCCCAGAAGTTCA
TGGTGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis