Browse Element(s) Details


Os.353.1.S1_at

Description gb:AK102512.1
DB_XREF= gi:32987721
TID=Os.353.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095I16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095I16, full insert sequence.
FL= gb:AK102512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0835011/11Cysteine synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08300NANA4+4420768..4420983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08310Os.18527.1.S1_at11/114+4424010..4428768expressed protein
LOC_Os04g08320Os.355.1.S1_at11/114+4429062..4431113integral membrane HRF1 family protein, putative, expressed
LOC_Os04g08330Os.6733.1.S1_at11/114+4433438..4437038expressed protein
LOC_Os04g08340Os.51302.1.A1_at11/114+4439840..4442494signal peptidase I family protein, expressed
LOC_Os04g08340Os.53378.1.S1_s_at1/114+4439840..4442494signal peptidase I family protein, expressed
LOC_Os04g08350Os.353.1.S1_at11/114+4444554..4448961Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os04g08360NANA4+4450190..4450696expressed protein
LOC_Os04g08370Os.24830.1.S1_at1/114+4457786..4460656Leucine Rich Repeat family protein
LOC_Os04g08390Os.24830.1.S1_at11/114+4472144..4477245Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006535biological_processcysteine biosynthesis from serine
GO:0019344biological_processcysteine biosynthesis
GO:0019499biological_processcyanide metabolism
GO:0051410biological_processdetoxification of nitrogen compound
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009536cellular_componentplastid
GO:0004124molecular_functioncysteine synthase activity
GO:0050017molecular_functionL-3-cyanoalanine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.353.1.S1_at--454--5291Chr04:4445846..4445998 (25 bp)
GAATGGTGGCAAACCAGGTCCTCAC
LOC_Os04g08350
Os.353.1.S1_at--941--6331Chr04:4445314..4445338 (25 bp)
GATGCTGTTAAGATGGCTCGAGAAT
LOC_Os04g08350
Os.353.1.S1_at--872--1051Chr04:4445058..4445301 (25 bp)
AGGGTCTTCTGGTTGGAATATCATC
LOC_Os04g08350
Os.353.1.S1_at--1147--5211Chr04:4445043..4445067 (25 bp)
GAATATCATCAGGAGCTAACACAGT
LOC_Os04g08350
Os.353.1.S1_at--633--2471Chr04:4445026..4445050 (25 bp)
AACACAGTTGCTGCTCTTGAACTAG
LOC_Os04g08350
Os.353.1.S1_at--9--2711Chr04:4444887..4445002 (25 bp)
AAGCTCATTGTGACTGTTCTTCCGA
LOC_Os04g08350
Os.353.1.S1_at--504--6491Chr04:4444850..4444874 (25 bp)
GATACCTGTCATCTGCATTGTTTGA
LOC_Os04g08350
Os.353.1.S1_at--635--9031Chr04:4444799..4444823 (25 bp)
TGCAGCCAGTGCCAGTGGACTAACT
LOC_Os04g08350
Os.353.1.S1_at--52--2071Chr04:4444777..4444801 (25 bp)
ACTTGGATAATCAACCTAGGCATTG
LOC_Os04g08350
Os.353.1.S1_at--117--6911Chr04:4444678..4444702 (25 bp)
GTATCTTCAGATTGTGCTGTCACTG
LOC_Os04g08350
Os.353.1.S1_at--810--3411Chr04:4444612..4444636 (25 bp)
CAGAATAACCTATGATCTCCCTCTC
LOC_Os04g08350
Target Sequence 
GAATGGTGGCAAACCAGGTCCTCACCTCATCACTGGAAATGGAGTGGGATTTAAGCCGGAAATTTTGAATATGGATATAA
TGGAAAAGGTTNTTGAGGTGAAAGGTGAGGATGCTGTTAAGATGGCTCGAGAATTGGCACTGAAGGAGGGTCTTCTGGTT
GGAATATCATCAGGAGCTAACACAGTTGCTGCTCTTGAACTAGCAAAGAAGCCAGAAAACAAAGGGAAGCTCATTGTGAC
TGTTCTTCCGAGTTTAGGGGAGAGATACCTGTCATCTGCATTGTTTGAGGAATTGAGAGCGGAGGCTGAGGCCATGCAGC
CAGTGCCAGTGGACTAACTTGGATAATCAACCTAGGCATTGAGTATTTGATGAACGAAATTGCTATACTCTAAATAAATT
TTCAATTTGTACTTTAATTCCCCATTACAAATTATGTATCTTCAGATTGTGCTGTCACTGAACTATATAGATGGACTCTC
TCTATGTAATTCCACATTTATCAGAATAACCTATGATCTCCCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis