Browse Element(s) Details


Os.51302.1.A1_at

Description gb:AK062476.1
DB_XREF= gi:32972494
TID=Os.51302.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51302 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-F08, full insert sequence.
FL= gb:AK062476.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0834011/11signal peptidase I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08290OsAffx.13726.1.S1_at11/114+4413614..4417078Zinc finger, C2H2 type family protein
LOC_Os04g08290OsAffx.13726.1.S1_x_at11/114+4413614..4417078Zinc finger, C2H2 type family protein
LOC_Os04g08300NANA4+4420768..4420983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08310Os.18527.1.S1_at11/114+4424010..4428768expressed protein
LOC_Os04g08320Os.355.1.S1_at11/114+4429062..4431113integral membrane HRF1 family protein, putative, expressed
LOC_Os04g08330Os.6733.1.S1_at11/114+4433438..4437038expressed protein
LOC_Os04g08340Os.51302.1.A1_at11/114+4439840..4442494signal peptidase I family protein, expressed
LOC_Os04g08340Os.53378.1.S1_s_at1/114+4439840..4442494signal peptidase I family protein, expressed
LOC_Os04g08350Os.353.1.S1_at11/114+4444554..4448961Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os04g08360NANA4+4450190..4450696expressed protein
LOC_Os04g08370Os.24830.1.S1_at1/114+4457786..4460656Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016020cellular_componentmembrane
GO:0003700molecular_functiontranscription factor activity
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51302.1.A1_at--879--6451Chr04:4440533..4440557 (25 bp)
GATAATCCTGACGTCAGCTGGGACT
LOC_Os04g08340
Os.51302.1.A1_at--68--8131Chr04:4440553..4440574 (22 bp)
GGACTCGCGAAGCTATGGCCCTATT
LOC_Os04g08340
Os.51302.1.A1_at--29--3691Chr04:4442017..4442039 (23 bp)
CTATTCCTCTCGGTCTGATGCAGGG
LOC_Os04g08340
Os.51302.1.A1_at--938--6131Chr04:4442040..4442064 (25 bp)
GAGGGTCACACACATAGTCTGGCCA
LOC_Os04g08340
Os.51302.1.A1_at--437--5071Chr04:4442115..4442139 (25 bp)
GCAGCGATGACTTTTGAATCTCTTG
LOC_Os04g08340
Os.51302.1.A1_at--729--8491Chr04:4442146..4442170 (25 bp)
TGGCTAATACAGTTTTTCCCCAACT
LOC_Os04g08340
Os.51302.1.A1_at--875--8211Chr04:4442249..4442273 (25 bp)
GGAATTTCATTCCTAATGGCACTGA
LOC_Os04g08340
Os.51302.1.A1_at--277--8251Chr04:4442266..4442290 (25 bp)
GGCACTGAAGTTGATTCTCCTTCCA
LOC_Os04g08340
Os.51302.1.A1_at--900--9491Chr04:4442281..4442305 (25 bp)
TCTCCTTCCAGAGTTCGTTGCAGAA
LOC_Os04g08340
Os.51302.1.A1_at--961--5331Chr04:4442316..4442340 (25 bp)
GAAGTTTTGCTTCTTGCAGCCCTTA
LOC_Os04g08340
Os.51302.1.A1_at--1080--471Chr04:4442423..4442447 (25 bp)
ATCTGTCACCTGTTGCGGTTGGAAA
LOC_Os04g08340
Target Sequence 
GATAATCCTGACGTCAGCTGGGACTCGCGAAGCTATGGCCCTATTCCTCTCGGTCTGATGCAGGGGAGGGTCACACACAT
AGTCTGGCCACCAAATAGAATTGGCCCAGTTGAGAGAAAGATGCCAGAAGGAAGAGTAATGCAGCGATGACTTTTGAATC
TCTTGTTAGGTTGGCTAATACAGTTTTTCCCCAACTGGAGTAGGATACAGGTTCAGAAGCCTCAAGATTAATTGTACTAT
CAAAGACAGTGAAGTAAGAATGTCATGGTCATTGGGAATTTCATTCCTAATGGCACTGAAGTTGATTCTCCTTCCAGAGT
TCGTTGCAGAATGCATGGTTAGAAGTTTTGCTTCTTGCAGCCCTTAGATATGAACGATGCAATGCTGAAATATTGCAAAT
TTCATTGGAGAGAGGAATCATTGACATCTTCAGTTCAAATTTATTATGATCTGTCACCTGTTGCGGTTGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51302.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis