Browse Element(s) Details


Os.6733.1.S1_at

Description gb:AK105123.1
DB_XREF= gi:32990332
TID=Os.6733.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6733 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-C10, full insert sequence.
FL= gb:AK105123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0833011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08290OsAffx.13726.1.S1_at11/114+4413614..4417078Zinc finger, C2H2 type family protein
LOC_Os04g08290OsAffx.13726.1.S1_x_at11/114+4413614..4417078Zinc finger, C2H2 type family protein
LOC_Os04g08300NANA4+4420768..4420983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08310Os.18527.1.S1_at11/114+4424010..4428768expressed protein
LOC_Os04g08320Os.355.1.S1_at11/114+4429062..4431113integral membrane HRF1 family protein, putative, expressed
LOC_Os04g08330Os.6733.1.S1_at11/114+4433438..4437038expressed protein
LOC_Os04g08340Os.51302.1.A1_at11/114+4439840..4442494signal peptidase I family protein, expressed
LOC_Os04g08340Os.53378.1.S1_s_at1/114+4439840..4442494signal peptidase I family protein, expressed
LOC_Os04g08350Os.353.1.S1_at11/114+4444554..4448961Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os04g08360NANA4+4450190..4450696expressed protein
LOC_Os04g08370Os.24830.1.S1_at1/114+4457786..4460656Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6733.1.S1_at--213--5451Chr04:4434066..4434090 (25 bp)
GAACGTTTTAGTTGCCACTGGTTTG
LOC_Os04g08330
Os.6733.1.S1_at--829--3911Chr04:4434025..4434049 (25 bp)
CTGGCTTAGCATTTCCATTCTATTT
LOC_Os04g08330
Os.6733.1.S1_at--54--3311Chr04:4433851..4433875 (25 bp)
CACAGGCTACATTTCGAGGACCATA
LOC_Os04g08330
Os.6733.1.S1_at--628--531Chr04:4433814..4433838 (25 bp)
ATCGCGGGACATTGGACCTGATTAT
LOC_Os04g08330
Os.6733.1.S1_at--1092--8771Chr04:4433796..4433820 (25 bp)
TGATTATACCGACTACCCCAAGAAG
LOC_Os04g08330
Os.6733.1.S1_at--97--9651Chr04:4433752..4433776 (25 bp)
TCAGAGGGACTCTTCTTGGACAGAT
LOC_Os04g08330
Os.6733.1.S1_at--179--1011Chr04:4433659..4433683 (25 bp)
AGGATTGGGCTTCCAGACTTTTGAA
LOC_Os04g08330
Os.6733.1.S1_at--948--10391Chr04:4433641..4433665 (25 bp)
TTTTGAATGTTCATGCACCCACCCA
LOC_Os04g08330
Os.6733.1.S1_at--699--10291Chr04:4433587..4433611 (25 bp)
TTTCCAGTTGGGACTGTCTTGTCCT
LOC_Os04g08330
Os.6733.1.S1_at--496--8711Chr04:4433568..4433592 (25 bp)
TGTCCTGTGCAAGTGCTCTTATGGA
LOC_Os04g08330
Os.6733.1.S1_at--1128--8851Chr04:4433457..4433481 (25 bp)
TGATGCTACGTTTGCGACACCATTA
LOC_Os04g08330
Target Sequence 
GAACGTTTTAGTTGCCACTGGTTTGTTGGCCTTTGCTGGTGCTGGCTTAGCATTTCCATTCTATTTTGTGAAATCAAAGA
ACAAACCCATCATTGATTCATCAAANCCTCTACCTCCACAGGCTACATTTCGAGGACCATATGTGAATACTGGATCGCGG
GACATTGGACCTGATTATACCGACTACCCCAAGAAGTGATCTATCTATCCAAAAATCAGAGGGACTCTTCTTGGACAGAT
GATATTGTTAGATTATTGGGACCTATAACTTTGAAGTTGTACTGACATTGTTATGTGTACTGTAGTCAAGGATTGGGCTT
CCAGACTTTTGAATGTTCATGCACCCACCCAAGCAGCGCAAAACCAGCAGTGAATAATTATTTCCAGTTGGGACTGTCTT
GTCCTGTGCAAGTGCTCTTATGGAGTTTCAAGAATAATTTTAGCACATANGTTTACTATATATTATCTNNTGNTAGTNCA
TGGANTTTATTNNAGGGATGTCTAGTGTAGGTGATGCTACGTTTGCGACACCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis