Browse Element(s) Details


Os.18527.1.S1_at

Description gb:AK067285.1
DB_XREF= gi:32977303
TID=Os.18527.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18527 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-307-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099G21, full insert sequence.
FL= gb:AK104586.1 gb:AK067285.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0831011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08270Os.361.1.S1_at7/114+4393170..4406037limit dextrinase, putative, expressed
LOC_Os04g08280Os.55383.1.S1_at11/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed
LOC_Os04g08280Os.55383.1.S1_x_at11/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed
LOC_Os04g08280Os.47999.3.S1_x_at1/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed
LOC_Os04g08290OsAffx.13726.1.S1_at11/114+4413614..4417078Zinc finger, C2H2 type family protein
LOC_Os04g08290OsAffx.13726.1.S1_x_at11/114+4413614..4417078Zinc finger, C2H2 type family protein
LOC_Os04g08300NANA4+4420768..4420983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08310Os.18527.1.S1_at11/114+4424010..4428768expressed protein
LOC_Os04g08320Os.355.1.S1_at11/114+4429062..4431113integral membrane HRF1 family protein, putative, expressed
LOC_Os04g08330Os.6733.1.S1_at11/114+4433438..4437038expressed protein
LOC_Os04g08340Os.51302.1.A1_at11/114+4439840..4442494signal peptidase I family protein, expressed
LOC_Os04g08340Os.53378.1.S1_s_at1/114+4439840..4442494signal peptidase I family protein, expressed
LOC_Os04g08350Os.353.1.S1_at11/114+4444554..4448961Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os04g08360NANA4+4450190..4450696expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18527.1.S1_at--107--2311Chr04:4425190..4425214 (25 bp)
AAATGGCGATCTGGCTCAACAGTGA
LOC_Os04g08310
Os.18527.1.S1_at--422--8611Chr04:4428234..4428258 (25 bp)
TGGGTGTTTTTATGGTCTTCTTCGA
LOC_Os04g08310
Os.18527.1.S1_at--964--10551Chr04:4428251..4428275 (25 bp)
TTCTTCGATGCAACCTCTGATGAGT
LOC_Os04g08310
Os.18527.1.S1_at--978--6851Chr04:4428366..4428390 (25 bp)
GTTTGACAGTGGTGCTTGTAGCCTT
LOC_Os04g08310
Os.18527.1.S1_at--1045--3371Chr04:4428407..4428431 (25 bp)
CAGCTCTGAGATGCCGAAGTTTCCA
LOC_Os04g08310
Os.18527.1.S1_at--1096--6971Chr04:4428449..4428473 (25 bp)
GTACCATTGTACACTTGCTATGCTA
LOC_Os04g08310
Os.18527.1.S1_at--88--871Chr04:4428497..4428521 (25 bp)
ATGGCTGTCAACACGCAATTGCATA
LOC_Os04g08310
Os.18527.1.S1_at--870--731Chr04:4428533..4428557 (25 bp)
ATGTAACCTCGTTGTTCTTCCAGAA
LOC_Os04g08310
Os.18527.1.S1_at--545--10511Chr04:4428637..4428661 (25 bp)
TTCACTTCAGTTTTTATCCCTTCAC
LOC_Os04g08310
Os.18527.1.S1_at--150--5251Chr04:4428730..4428754 (25 bp)
GAATCAGTGTTTAGACCTCCATGGT
LOC_Os04g08310
Os.18527.1.S1_at--460--5831Chr04:4428743..4428767 (25 bp)
GACCTCCATGGTCGTATTTTCTACT
LOC_Os04g08310
Target Sequence 
AAATGGCGATCTGGCTCAACAGTGAGAGGGTGACCAACAGGGCTGGTGGGTGTTTTTATGGTCTTCTTCGATGCAACCTC
TGATGAGTCATCACATGTCATCTGAAGTTGTAACTGAGACGGTTGGCAATATGATTGTGACAATGACGAAAGGAGTATAC
CTAATGTAATAATATGAAGTTTGACAGTGGTGCTTGTAGCCTTCGTTTGGTTGCCTTGCCAGCTCTGAGATGCCGAAGTT
TCCACCGCTACACACACCACCGTACCATTGTACACTTGCTATGCTACATTTTCTTTTATGTTCTGAGGAATGGCTGTCAA
CACGCAATTGCATACTGCGAAATCCATGTAACCTCGTTGTTCTTCCAGAACAAATTCAGATGCATTTGTGCTGTTCTTTT
AAGAAGGAAAACCTGGGAGTCTNGTTTACTGTTCCTTACAGGAGGTGGTTTCACTTCAGTTTTTATCCCTTCACAACTGG
GATGTTGCTTGTCATTATCATGGTTTTTTTTGTATTGCAAGCATTATGATTGCTACNCATATGAATCAGTGTTTAGACCT
CCATGGTCGTATTTTCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18527.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis