Browse Element(s) Details


Os.361.1.S1_at

Description gb:BI799485
DB_XREF= gi:15851209
DB_XREF=H133G10
CLONE=H133G10
TID=Os.361.1
CNT=18
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.361 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for starch debranching enzyme (R-enzyme), complete cds
FL= gb:D50602.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g082707/11limit dextrinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08230OsAffx.14826.2.S1_at8/114+4377552..4380807hypothetical protein
LOC_Os04g08230OsAffx.14826.1.S1_at1/114+4377552..4380807hypothetical protein
LOC_Os04g08240OsAffx.25925.1.S1_at11/114+4384385..4385911hypothetical protein
LOC_Os04g08250OsAffx.13724.1.S1_at11/114+4388708..4390024hypothetical protein
LOC_Os04g08260OsAffx.13725.1.S1_at11/114+4391286..4391534hypothetical protein
LOC_Os04g08270Os.361.1.S1_at7/114+4393170..4406037limit dextrinase, putative, expressed
LOC_Os04g08280Os.55383.1.S1_at11/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed
LOC_Os04g08280Os.55383.1.S1_x_at11/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed
LOC_Os04g08280Os.47999.3.S1_x_at1/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed
LOC_Os04g08290OsAffx.13726.1.S1_at11/114+4413614..4417078Zinc finger, C2H2 type family protein
LOC_Os04g08290OsAffx.13726.1.S1_x_at11/114+4413614..4417078Zinc finger, C2H2 type family protein
LOC_Os04g08300NANA4+4420768..4420983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08310Os.18527.1.S1_at11/114+4424010..4428768expressed protein
LOC_Os04g08320Os.355.1.S1_at11/114+4429062..4431113integral membrane HRF1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0005983biological_processstarch catabolism
GO:0004556molecular_functionalpha-amylase activity
GO:0051060molecular_functionpullulanase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.361.1.S1_at--249--5531Chr04:4404383..4404407 (25 bp)
GAAAACCCATCTTTCAGACCTTTGA
LOC_Os04g08270
Os.361.1.S1_at--191--2411NONE
AAAAATCACATTCTTTCCTGCTTCG
NONE
Os.361.1.S1_at--978--3671NONE
CTTTCCTGCTTCGACAATTTTGTTG
NONE
Os.361.1.S1_at--924--1031Chr04:4404950..4404974 (25 bp)
AGGTCCCTCGATGGTACCAGGAGTT
LOC_Os04g08270
Os.361.1.S1_at--294--5771Chr04:4405225..4405248 (24 bp)
GACGATCTTCAATGTCTGTCCACAT
LOC_Os04g08270
Os.361.1.S1_at--631--1411Chr04:4405262..4405285 (24 bp)
AGAAATCCATGATCTCGCTTCGTTG
LOC_Os04g08270
Os.361.1.S1_at--416--3151Chr04:4405610..4405634 (25 bp)
AATTCATCGGATGCTCTAGTCAGGC
LOC_Os04g08270
Os.361.1.S1_at--271--931Chr04:4405631..4405655 (25 bp)
AGGCAGTCAGCATACGAGGCGTCCA
LOC_Os04g08270
Os.361.1.S1_at--374--2311Chr04:4405655..4405679 (25 bp)
AAAGGTCGATTCACCGTGCCAAGAA
LOC_Os04g08270
Os.361.1.S1_at--529--2551NONE
AACTGCAGTGTTTGTTCAACCTAGA
NONE
Os.361.1.S1_at--220--1751NONE
ACCTAGATGTTGATGCCCTTGGGAA
NONE
Target Sequence 
GAAAACCCATCTTTCAGACCTTTGAAAAATCACATTCTTTCCTGCTTCGACAATTTTGTTGACATCTTGAAGATCAGATA
CTCCTCNCCGCTCTTTCGTTTNAGTACAGCAAGTGNCNNTGAGCAAANGGGTTCGCTTTCNCAACACAGGTCCCTCGATG
GTACCAGGAGTTATTGTCATGAGCATTAAAGATGCTCAAAATGAAAAATGTNAAATGGCNCAGTTAGATAAAAACTTCTC
NTATGTCGTGACGATCTTCAATGTCTGTCCACATGAAGTGTCTATAGAAATCCATGATCTCGCTTCGTTGGGGCTTGAAT
TACATCCTATTCAGGTGAATTCATCGGATGCTCTAGTCAGGCAGTCAGCATACGAGGCGTCCAAAGGTCGATTCACCGTG
CCAAGAAGAACAACTGCAGTGTTTGTTCAACCTAGATGTTGATGCCCTTGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis