Browse Element(s) Details


OsAffx.13724.1.S1_at

Description tigr:9632.m00738
TID=OsAffx.13724.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0825011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08230OsAffx.14826.2.S1_at8/114+4377552..4380807hypothetical protein
LOC_Os04g08230OsAffx.14826.1.S1_at1/114+4377552..4380807hypothetical protein
LOC_Os04g08240OsAffx.25925.1.S1_at11/114+4384385..4385911hypothetical protein
LOC_Os04g08250OsAffx.13724.1.S1_at11/114+4388708..4390024hypothetical protein
LOC_Os04g08260OsAffx.13725.1.S1_at11/114+4391286..4391534hypothetical protein
LOC_Os04g08270Os.361.1.S1_at7/114+4393170..4406037limit dextrinase, putative, expressed
LOC_Os04g08280Os.55383.1.S1_at11/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed
LOC_Os04g08280Os.55383.1.S1_x_at11/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed
LOC_Os04g08280Os.47999.3.S1_x_at1/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed
LOC_Os04g08290OsAffx.13726.1.S1_at11/114+4413614..4417078Zinc finger, C2H2 type family protein
LOC_Os04g08290OsAffx.13726.1.S1_x_at11/114+4413614..4417078Zinc finger, C2H2 type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13724.1.S1_at--298--9371Chr04:4389222..4389246 (25 bp)
TCGACGGCGTGTTTACCAGCAGGGC
LOC_Os04g08250
OsAffx.13724.1.S1_at--320--8711Chr04:4389195..4389219 (25 bp)
TGTCGCGGAAGCTGCCGGCCATCAC
LOC_Os04g08250
OsAffx.13724.1.S1_at--841--4631Chr04:4389110..4389134 (25 bp)
GCTGATGGTGGTGACGAAATCCTTC
LOC_Os04g08250
OsAffx.13724.1.S1_at--813--7491Chr04:4389103..4389127 (25 bp)
GTGGTGACGAAATCCTTCAAGGTGG
LOC_Os04g08250
OsAffx.13724.1.S1_at--31--7431Chr04:4388959..4388983 (25 bp)
GTGTTCGTCGGAGCGAGCAGCAACT
LOC_Os04g08250
OsAffx.13724.1.S1_at--784--1571Chr04:4388904..4388928 (25 bp)
AGCTCAGGCCGGACTGCGTCTACTT
LOC_Os04g08250
OsAffx.13724.1.S1_at--763--9711Chr04:4388862..4388886 (25 bp)
TCAAGGGCCCCTTCTGCAGGGACGA
LOC_Os04g08250
OsAffx.13724.1.S1_at--1026--951Chr04:4388838..4388862 (25 bp)
AGGACCGCGGGTTCCACAGCTACCA
LOC_Os04g08250
OsAffx.13724.1.S1_at--1070--4851Chr04:4388820..4388844 (25 bp)
GCTACCACAGCTGCGACGACAAGAA
LOC_Os04g08250
OsAffx.13724.1.S1_at--53--7791Chr04:4388792..4388816 (25 bp)
GGTCGTCGGCGTTTACAGCCTCAAG
LOC_Os04g08250
OsAffx.13724.1.S1_at--92--4631Chr04:4388784..4388808 (25 bp)
GCGTTTACAGCCTCAAGGACGGCGG
LOC_Os04g08250
Target Sequence 
TCGACGGCGTGTTTACCAGCAGGGCGGTGTCGCGGAAGCTGCCGGCCATCACCGACGGCGGCGGCGGCCACCACCACCGC
AGGTACCTCGTGGCGGCGCCGGGGGGCGGCGAGCTGATGGTGGTGACGAAATCCTTCAAGGTGGTGGAGATCGGGGAGCG
CTACATGGACAGCGAGAGGCGGGTGTGCTTCACGGTGCAGGTGCTCGACGACGGCGACGAGGGGGGGAGGTGGAGGAGGG
CGGCGAGCATCGGGCAGGCGGCGGTGTTCGTCGGAGCGAGCAGCAACTCGGTGTGCGTGTCGACGAAGGCGCACCCGGAG
CTCAGGCCGGACTGCGTCTACTTCGCCGCCGACGAGCTGGTCAAGGGCCCCTTCTGCAGGGACGAGGACCGCGGGTTCCA
CAGCTACCACAGCTGCGACGACAAGAAGAGGGTCGTCGGCGTTTACAGCCTCAAGGACGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis