Browse Element(s) Details


Os.55383.1.S1_x_at

Description gb:AK107984.1
DB_XREF= gi:32993193
TID=Os.55383.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55383 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-E09, full insert sequence.
FL= gb:AK107984.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0828011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08240OsAffx.25925.1.S1_at11/114+4384385..4385911hypothetical protein
LOC_Os04g08250OsAffx.13724.1.S1_at11/114+4388708..4390024hypothetical protein
LOC_Os04g08260OsAffx.13725.1.S1_at11/114+4391286..4391534hypothetical protein
LOC_Os04g08270Os.361.1.S1_at7/114+4393170..4406037limit dextrinase, putative, expressed
LOC_Os04g08280Os.55383.1.S1_at11/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed
LOC_Os04g08280Os.55383.1.S1_x_at11/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed
LOC_Os04g08280Os.47999.3.S1_x_at1/114+4406320..4408286retrotransposon protein, putative, unclassified, expressed
LOC_Os04g08290OsAffx.13726.1.S1_at11/114+4413614..4417078Zinc finger, C2H2 type family protein
LOC_Os04g08290OsAffx.13726.1.S1_x_at11/114+4413614..4417078Zinc finger, C2H2 type family protein
LOC_Os04g08300NANA4+4420768..4420983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g08310Os.18527.1.S1_at11/114+4424010..4428768expressed protein
LOC_Os04g08320Os.355.1.S1_at11/114+4429062..4431113integral membrane HRF1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55383.1.S1_x_at--796--4511Chr04:4407000..4407024 (25 bp)
GCTCCGGCGGCCAGGACTTCTACGA
LOC_Os04g08280
Os.55383.1.S1_x_at--294--5811Chr04:4406800..4406824 (25 bp)
GACGCGTACCGGAGCGCGCGCTACT
LOC_Os04g08280
Os.55383.1.S1_x_at--928--5691Chr04:4406731..4406755 (25 bp)
GACTACTCGCAGGTGTTCAAGGCCG
LOC_Os04g08280
Os.55383.1.S1_x_at--825--9911Chr04:4406680..4406704 (25 bp)
TACGATGACGCCAGCAGCACGTTCA
LOC_Os04g08280
Os.55383.1.S1_x_at--426--6311Chr04:4406677..4406701 (25 bp)
GATGACGCCAGCAGCACGTTCACCT
LOC_Os04g08280
Os.55383.1.S1_x_at--671--1751Chr04:4406656..4406680 (25 bp)
ACCTGCTTCGGAGCATCCAGCTATG
LOC_Os04g08280
Os.55383.1.S1_x_at--1144--10591Chr04:4406650..4406674 (25 bp)
TTCGGAGCATCCAGCTATGACGTCA
LOC_Os04g08280
Os.55383.1.S1_x_at--680--5931Chr04:4406646..4406670 (25 bp)
GAGCATCCAGCTATGACGTCACCTT
LOC_Os04g08280
Os.55383.1.S1_x_at--708--10091Chr04:4406635..4406659 (25 bp)
TATGACGTCACCTTCTGCCCTCGAT
LOC_Os04g08280
Os.55383.1.S1_x_at--167--9491Chr04:4406622..4406646 (25 bp)
TCTGCCCTCGATCTTAATTACAATG
LOC_Os04g08280
Os.55383.1.S1_x_at--500--2231Chr04:4406601..4406627 (25 bp)
ACAATGTGATTGTTGCTATATAAGT
LOC_Os04g08280
Target Sequence 
GCTCCGGCGGCCAGGACTTCTACGANGTCAGCCTCGTCGACGGGTTCAACGTGCCGGTGCGCCTCGCGCCGTCGTCNTCG
GGCGGCGGCGGGGGCGACTGCCACGCCGTGTCGTGCGCGGGCGACGTNAACGCCGCGTGCCCCTCCGACCTCCGCGTCGT
GTCCGGCGNCGGCGCCGTCGTGGCGTGCCGGAGCGCGTGCGACGCGTACCGGAGCGCGCGCTACTGCTGCACCGGCGCCT
ACGGCTCGCCGGCGGCGTGCGGGCCCACCGACTACTCGCAGGTGTTCAAGGCCGCGTGCCCGGCGGCGTACAGCTACGCC
TACGATGACGCCAGCAGCACGTTCACCTGCTTCGGAGCATCCAGCTATGACGTCACCTTCTGCCCTCGATCTTAATTACA
ATGTGATTGTTGCTATATAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55383.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis