Browse Element(s) Details


Os.26756.1.S1_at

Description gb:AK064159.1
DB_XREF= gi:32974177
TID=Os.26756.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26756 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-F07, full insert sequence.
FL= gb:AK064765.1 gb:AK064159.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0841011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g08390Os.24830.1.S1_at11/114+4472144..4477245Leucine Rich Repeat family protein, expressed
LOC_Os04g08400OsAffx.24267.1.S1_at2/114+4484933..4490885retrotransposon protein, putative, unclassified
LOC_Os04g08410Os.26756.1.S1_at11/114+4496116..4500992expressed protein
LOC_Os04g08410Os.26756.1.S2_at10/114+4496116..4500992expressed protein
LOC_Os04g08430NANA4+4516288..4519579retrotransposon protein, putative, unclassified
LOC_Os04g08440NANA4+4520206..4526359retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006259biological_processDNA metabolism
GO:0006265biological_processDNA topological change
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003918molecular_functionDNA topoisomerase (ATP-hydrolyzing) activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26756.1.S1_at--256--311Chr04:4497324..4497348 (25 bp)
ATACCAGTGGGCTCTGAGTTCCAAG
LOC_Os04g08410
Os.26756.1.S1_at--524--6051Chr04:4497309..4497333 (25 bp)
GAGTTCCAAGCACAAGTACCACAAT
LOC_Os04g08410
Os.26756.1.S1_at--230--5131Chr04:4497230..4497254 (25 bp)
GCACAAAGGTCTGGCCTCTGGAAAA
LOC_Os04g08410
Os.26756.1.S1_at--41--4751Chr04:4497143..4497167 (25 bp)
GCTGCAACCTTCCAGGATCTGTAGA
LOC_Os04g08410
Os.26756.1.S1_at--957--9651Chr04:4497085..4497109 (25 bp)
TCAGCTGCGACGTGAACTTGATTCA
LOC_Os04g08410
Os.26756.1.S1_at--180--5591Chr04:4497024..4497048 (25 bp)
GAAATCGCACTTTCCTGGACAGATA
LOC_Os04g08410
Os.26756.1.S1_at--855--2931Chr04:4496982..4497006 (25 bp)
AAGGCTTGCGTGCAGCTTAATGCCC
LOC_Os04g08410
Os.26756.1.S1_at--17--3671Chr04:4496967..4496991 (25 bp)
CTTAATGCCCCATCTTCAGGAAGGA
LOC_Os04g08410
Os.26756.1.S1_at--778--8211Chr04:4496945..4496969 (25 bp)
GGAATTTCTGGAAGCGTCTCCATAT
LOC_Os04g08410
Os.26756.1.S1_at--406--4011Chr04:4496931..4496955 (25 bp)
CGTCTCCATATGCTTTTTCAGTCAA
LOC_Os04g08410
Os.26756.1.S1_at--427--6271Chr04:4496786..4496810 (25 bp)
GATTCTTGGGTAACCGCCTTGGTCA
LOC_Os04g08410
Target Sequence 
ATACCAGTGGGCTCTGAGTTCCAAGCACAAGTACCACAATGGACTGGTGAGTTGCCTGTAAGCTATGATAATGCAGAAAC
CAGGAAATGGTTGGGCACAAAGGTCTGGCCTCTGGAAAATGGTAACAGGAAATTATCATATTTTTGTAACCCTGTTGGAA
AAGGTAGAGAAGGTGTTTGTGGCTGCAACCTTCCAGGATCTGTAGAATGTGTTAGGTTTCATGTTGCAGAAAGGAGACTT
CAGCTGCGACGTGAACTTGATTCAGCTTTCTATGCATGGGGATTTGATCGTATGGGAGAGGAAATCGCACTTTCCTGGAC
AGATAAAGAGGAAGCAAATTTCAAGGCTTGCGTGCAGCTTAATGCCCCATCTTCAGGAAGGAATTTCTGGAAGCGTCTCC
ATATGCTTTTTCAGTCAAAGGGTAGGAAAGAACTTGTGAGCTACTATTTTAATTGTTTTCTACTTAGACGGAGGTGTTAT
CAGAATAGGATGACTCCAAATAACATAGATAGTGATGATGAGGATGAGACAGAATTTGGATTCTTGGGTAACCGCCTTGG
TCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis