Browse Element(s) Details


Os.4788.1.S1_at

Description gb:AK062909.1
DB_XREF= gi:32972927
TID=Os.4788.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4788 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G02, full insert sequence.
FL= gb:AK062909.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0537010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05340OsAffx.31593.1.S1_at11/1112+2406163..2406522hypothetical protein
LOC_Os12g05350NANA12+2410369..2411119hypothetical protein
LOC_Os12g05360Os.55754.1.S1_at11/1112+2416957..2418339expressed protein
LOC_Os12g05360Os.55754.1.S1_x_at11/1112+2416957..2418339expressed protein
LOC_Os12g05370Os.4788.1.S1_at10/1112+2425130..2428788Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g05370OsAffx.31594.1.S1_at10/1112+2425130..2428788Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g05380Os.57061.1.S1_at11/1112+2432328..2433867Glycosyltransferase 3, putative, expressed
LOC_Os12g05394Os.50606.1.S1_at11/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05394OsAffx.31595.1.S1_x_at2/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05394OsAffx.12602.1.S1_at1/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05410Os.12899.1.S1_at11/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05410Os.12899.1.S1_s_at10/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05410OsAffx.19505.1.S1_at7/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05420Os.17763.1.S1_at11/1112+2450805..2454624calmodulin-binding family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4788.1.S1_at--667--10171NONE
TTTGGGTAGGGCACCATTCAACATG
NONE
Os.4788.1.S1_at--172--491Chr12:2426774..2426798 (25 bp)
ATCGGACATTATATACTCCACCGGC
LOC_Os12g05370
Os.4788.1.S1_at--34--171Chr12:2426767..2426791 (25 bp)
ATTATATACTCCACCGGCGGAAGGG
LOC_Os12g05370
Os.4788.1.S1_at--859--1691Chr12:2426692..2426716 (25 bp)
ACCAGCAAAAACAGTAGAGTCCTCA
LOC_Os12g05370
Os.4788.1.S1_at--215--6951Chr12:2426679..2426703 (25 bp)
GTAGAGTCCTCATATTCATGACAGA
LOC_Os12g05370
Os.4788.1.S1_at--936--2131Chr12:2426659..2426683 (25 bp)
ACAGATCATGATCCACTAAGCTAGG
LOC_Os12g05370
Os.4788.1.S1_at--1096--6351Chr12:2426650..2426674 (25 bp)
GATCCACTAAGCTAGGACCCTGCAA
LOC_Os12g05370
Os.4788.1.S1_at--1024--8951Chr12:2426616..2426640 (25 bp)
TGAAATTTCTGCTGTTCTGTCTGCT
LOC_Os12g05370
Os.4788.1.S1_at--1089--8711Chr12:2426599..2426623 (25 bp)
TGTCTGCTCTCTGCCAGGTGAAACT
LOC_Os12g05370
Os.4788.1.S1_at--929--7031Chr12:2426498..2426522 (25 bp)
GTAAATATGAGAAACCGTTCAGGTT
LOC_Os12g05370
Os.4788.1.S1_at--448--1711Chr12:2426460..2426484 (25 bp)
ACCACATTTGTTTGTCATCATATTC
LOC_Os12g05370
Target Sequence 
TTTGGGTAGGGCACCATTCAACATGCCCAGTTTGGTAGAATTTCGTTGTGCGACTACCCTGATAGCAAGCACACGATGTC
TCCTGTACCAAGTGCAGTGATAATACCATTACCTCCATGTTCTCCTGAAGCATCAAGATCAGATCAATGCAATTGCCTAT
TCGTCGGAACAGGTCATTCGCCAAGGACATCGCAGGTTCTCAGAAATGAACCTGACCAGGTGAATCGGACATTATATACT
CCACCGGCGGAAGGGGGGAATAGCTTGCCATCATCAGAAGTTAACCCCCCTGGTGAAAAATAACAACCAGCAAAAACAGT
AGAGTCCTCATATTCATGACAGATCATGATCCACTAAGCTAGGACCCTGCAACTANNNNNTTGAAATTTCTGCTGTTCTG
TCTGCTCTCTGCCAGGTGAAACTACCTGTAATATTAGAAACATCGACACAGGGGGATCCGTGGATTGCTGTCATAGGTTA
GTTTTGGAGCGNTTTTGATGTAAATATGAGAAACCGTTCAGGTTTCTTGTNAAGAAAACCACATTTGTTTGTCATCATAT
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis