Browse Element(s) Details


Os.12899.1.S1_at

Description gb:D12628.1
DB_XREF= gi:391883
TID=Os.12899.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12899 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for Maternal G10 like protein, complete cds.
PROD=Maternal G10 like protein
FL= gb:D12628.1 gb:AK103299.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0541011/11G10 protein homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05370Os.4788.1.S1_at10/1112+2425130..2428788Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g05370OsAffx.31594.1.S1_at10/1112+2425130..2428788Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g05380Os.57061.1.S1_at11/1112+2432328..2433867Glycosyltransferase 3, putative, expressed
LOC_Os12g05394Os.50606.1.S1_at11/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05394OsAffx.31595.1.S1_x_at2/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05394OsAffx.12602.1.S1_at1/1112+2440465..2445037protein kinase family protein, putative, expressed
LOC_Os12g05410Os.12899.1.S1_at11/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05410Os.12899.1.S1_s_at10/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05410OsAffx.19505.1.S1_at7/1112+2448168..2450496G10 protein homolog, putative, expressed
LOC_Os12g05420Os.17763.1.S1_at11/1112+2450805..2454624calmodulin-binding family protein, putative, expressed
LOC_Os12g05430Os.9317.2.S1_at11/1112+2459543..246031160S ribosomal protein L26-1, putative, expressed
LOC_Os12g05430Os.45407.1.S1_s_at3/1112+2459543..246031160S ribosomal protein L26-1, putative, expressed
LOC_Os12g05430Os.26422.1.S1_x_at1/1112+2459543..246031160S ribosomal protein L26-1, putative, expressed
LOC_Os12g05440Os.51923.1.S1_at11/1112+2466931..2468702Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12899.1.S1_at--261--7771Chr12:2450303..2450327 (25 bp)
GGTGACTAAGTATCCACTATTGGGA
LOC_Os12g05410
Os.12899.1.S1_at--888--3311Chr12:2450317..2450341 (25 bp)
CACTATTGGGATTACTTTTCAAGTT
LOC_Os12g05410
Os.12899.1.S1_at--920--3471Chr12:2450346..2450370 (25 bp)
CAGGAGCAAGTTGATGAATGTAAAC
LOC_Os12g05410
Os.12899.1.S1_at--275--5271Chr12:2450361..2450385 (25 bp)
GAATGTAAACTGAATAACTGATGTA
LOC_Os12g05410
Os.12899.1.S1_at--90--2571Chr12:2450376..2450400 (25 bp)
AACTGATGTAGTGATATCTCTGATG
LOC_Os12g05410
Os.12899.1.S1_at--1075--6271Chr12:2450380..2450404 (25 bp)
GATGTAGTGATATCTCTGATGTACT
LOC_Os12g05410
Os.12899.1.S1_at--279--7411Chr12:2450386..2450410 (25 bp)
GTGATATCTCTGATGTACTTGGAAA
LOC_Os12g05410
Os.12899.1.S1_at--523--9191Chr12:2450413..2450437 (25 bp)
TGCCTAGCCTGTCTAGAGAGTAGAC
LOC_Os12g05410
Os.12899.1.S1_at--292--9991Chr12:2450417..2450441 (25 bp)
TAGCCTGTCTAGAGAGTAGACTGAA
LOC_Os12g05410
Os.12899.1.S1_at--637--6951Chr12:2450432..2450456 (25 bp)
GTAGACTGAATGTACTCGTAAGATG
LOC_Os12g05410
Os.12899.1.S1_at--421--7011Chr12:2450443..2450467 (25 bp)
GTACTCGTAAGATGATGGATGTGGT
LOC_Os12g05410
Target Sequence 
GGTGACTAAGTATCCACTATTGGGATTACTTTTCAAGTTACATCAGGAGCAAGTTGATGAATGTAAACTGAATAACTGAT
GTAGTGATATCTCTGATGTACTTGGAAAAANNTGCCTAGCCTGTCTAGAGAGTAGACTGAATGTACTCGTAAGATGATGG
ATGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12899.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis