Browse Element(s) Details


Os.5788.1.S1_at

Description gb:AK065045.1
DB_XREF= gi:32975063
TID=Os.5788.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.5788 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001I02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001I02, full insert sequence.
FL= gb:AK065045.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4818011/11PDZ domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48116Os.49403.1.S1_at11/112+29452225..29455248expressed protein
LOC_Os02g48122Os.24137.1.A1_at11/112+29457961..29459791expressed protein
LOC_Os02g48130Os.27653.1.S1_at11/112+29459791..29462183expressed protein
LOC_Os02g48140Os.55371.1.S1_at4/112+29462598..29463092Hsp20/alpha crystallin family protein
LOC_Os02g48150Os.54450.1.S1_s_at11/112+29465553..29466701expressed protein
LOC_Os02g48150OsAffx.24777.1.S1_at11/112+29465553..29466701expressed protein
LOC_Os02g48160OsAffx.2996.1.S1_at9/112+29469057..29470272hypothetical protein
LOC_Os02g48170OsAffx.24778.1.S1_s_at11/112+29475597..29476731expressed protein
LOC_Os02g48180Os.5788.1.S1_at11/112+29477591..29489595PDZ domain family protein, expressed
LOC_Os02g48190Os.17323.1.S1_x_at11/112+29496782..29500718expressed protein
LOC_Os02g48190Os.17323.2.S1_at11/112+29496782..29500718expressed protein
LOC_Os02g48200Os.55056.1.A1_at11/112+29509795..29512887Protein kinase domain containing protein, expressed
LOC_Os02g48210OsAffx.12547.1.S1_at11/112+29513664..29517386Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004295molecular_functiontrypsin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5788.1.S1_at--581--7451Chr02:29478252..29478276 (25 bp)
GTGTCATGGAAGTCCCGTACATAGA
LOC_Os02g48180
Os.5788.1.S1_at--196--1271Chr02:29478230..29478254 (25 bp)
AGATATGGTCTCTATGCTCTGCAGT
LOC_Os02g48180
Os.5788.1.S1_at--212--811Chr02:29478190..29478214 (25 bp)
ATGGGAAGCCAACTCCAGATCTTGA
LOC_Os02g48180
Os.5788.1.S1_at--734--11Chr02:29478008..29478032 (25 bp)
ATTTGTTAGGGTGCGGACCGTCCAT
LOC_Os02g48180
Os.5788.1.S1_at--459--851Chr02:29477979..29478003 (25 bp)
ATGGCAAACCTCGTGTGCTTACTTT
LOC_Os02g48180
Os.5788.1.S1_at--1092--7851Chr02:29477916..29477940 (25 bp)
GGTTTGAACCAGAGACTTCCACATG
LOC_Os02g48180
Os.5788.1.S1_at--652--7431Chr02:29477836..29477860 (25 bp)
GTGTTTGAACTCTTCATGCTCTCAG
LOC_Os02g48180
Os.5788.1.S1_at--392--3531Chr02:29477822..29477846 (25 bp)
CATGCTCTCAGAGGGTGTTCCTTAG
LOC_Os02g48180
Os.5788.1.S1_at--794--7831Chr02:29477742..29477766 (25 bp)
GGTAAGCTAGAATCCTGCGTAATGC
LOC_Os02g48180
Os.5788.1.S1_at--824--271Chr02:29477650..29477674 (25 bp)
ATATGGATTCATTGCCTGTGGATAA
LOC_Os02g48180
Os.5788.1.S1_at--1122--5051Chr02:29477618..29477642 (25 bp)
GCAGCATCTGCTTTTTGTATAATCT
LOC_Os02g48180
Target Sequence 
GTGTCATGGAAGTCCCGTACATAGATATGGTCTCTATGCTCTGCAGTGGATAGTGGAAGTTAATGGGAAGCCAACTCCAG
ATCTTGAAACTTTTATACAAGTGGTGAAGGGATTGGAAAATGGTGAATTTGTTAGGGTGCGGACCGTCCATTTGAATGGC
AAACCTCGTGTGCTTACTTTGAAACAGGACCTTCACTACTGGCCGACCTGGGAGCTCAGGTTTGAACCAGAGACTTCCAC
ATGGAAGAGGGGAATAATAAAAGCGTTGCAATCAACTGTAGCGTGATCAACTATGTTTGTGTTTGAACTCTTCATGCTCT
CAGAGGGTGTTCCTTAGGGAGCCTAAGCATGGAGGTGCGGAAATGGGGAATGCGTGCCCAACTGCCCATGTTGGTAAGCT
AGAATCCTGCGTAATGCAGGATGGAATGGTTGGCATTAGGATAGGATGCTTGAAGTTGAAGGATATAGTTATTCATAGAA
AAATATATGGATTCATTGCCTGTGGATAATTAGACCGCAGCATCTGCTTTTTGTATAATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis