Browse Element(s) Details


Os.5803.1.S1_at

Description gb:AK111083.1
DB_XREF= gi:32996292
TID=Os.5803.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-F06, full insert sequence.
FL= gb:AK111083.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3351010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33480Os.11348.1.S1_at11/114+20065154..20068438histone deacetylase 1A, putative, expressed
LOC_Os04g33490OsAffx.14113.1.S1_s_at11/114+20069030..20071908alkaline/neutral invertase, putative, expressed
LOC_Os04g33490OsAffx.14113.1.S1_at8/114+20069030..20071908alkaline/neutral invertase, putative, expressed
LOC_Os04g33500NANA4+20072158..20075122Protein kinase domain containing protein
LOC_Os04g33510Os.5803.1.S1_at10/114+20088776..20092096expressed protein
LOC_Os04g33520Os.49614.1.S1_at11/114+20092973..20094589Root cap family protein, expressed
LOC_Os04g33530Os.50534.1.S1_at11/114+20096126..20098023Ser/Thr protein phosphatase family protein, expressed
LOC_Os04g33540OsAffx.14114.1.S1_at11/114+20098703..20099584hypothetical protein
LOC_Os04g33540OsAffx.27050.1.S1_x_at4/114+20098703..20099584hypothetical protein
LOC_Os04g33550OsAffx.3985.1.S1_at11/114+20103502..20104006hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5803.1.S1_at--337--8391Chr04:20090787..20090811 (25 bp)
GGCGCATGATTCTTGCTAGTGGACT
LOC_Os04g33510
Os.5803.1.S1_at--491--5851Chr04:20091635..20091659 (25 bp)
GAGCCAAAGTTCTCCAGTGCAAGAG
LOC_Os04g33510
Os.5803.1.S1_at--870--5171Chr04:20091653..20091677 (25 bp)
GCAAGAGACAACTCCTGCAGTCAGG
LOC_Os04g33510
Os.5803.1.S1_at--669--10051Chr04:20091701..20091725 (25 bp)
TAGTTTTCGTTTTCTGATTTGCAAA
LOC_Os04g33510
Os.5803.1.S1_at--213--171Chr04:20091745..20091769 (25 bp)
ATTATTGGCCATGGGCATGCACTCG
LOC_Os04g33510
Os.5803.1.S1_at--944--651Chr04:20091761..20091785 (25 bp)
ATGCACTCGTTCCTTTCCACAGTAT
LOC_Os04g33510
Os.5803.1.S1_at--819--6911Chr04:20091782..20091806 (25 bp)
GTATGCTGTCTCCAAACCAACAATC
LOC_Os04g33510
Os.5803.1.S1_at--832--3031Chr04:20091803..20091827 (25 bp)
AATCGCACCTGCTAACCAGTACAAT
LOC_Os04g33510
Os.5803.1.S1_at--734--10731Chr04:20091828..20091852 (25 bp)
TTGCATTTATACATAGGCTCCACCC
LOC_Os04g33510
Os.5803.1.S1_at--889--291Chr04:20091983..20092002 (20 bp)
ATAGCCATAGCTGCGAGTCTAATGT
LOC_Os04g33510
Os.5803.1.S1_at--258--8671NONE
TGTGCCTTGGGAACCTTACCATAGC
NONE
Target Sequence 
GGCGCATGATTCTTGCTAGTGGACTTGAGGGCATGGAAGGATTTCGCCAAAGATGGAGCTTACATGGACAGCTTGGAGAC
ACNAGGAAAAGGTTGGAAGCGCTGAACAGTGGAATCGTAAAAAGAGGGAGCCAAAGTTCTCCAGTGCAAGAGACAACTCC
TGCAGTCAGGAANAGGTGGTTCCTTTGGTAGGTTAGTTTTCGTTTTCTGATTTGCAAACCAGTGTAGCATATGGTATATT
ATTGGCCATGGGCATGCACTCGTTCCTTTCCACAGTATGCTGTCTCCAAACCAACAATCGCACCTGCTAACCAGTACAAT
TTGCATTTATACATAGGCTCCACCCCCAACTTCCAACCTTCCATCACATCACATCACATCCAAAACTTTCCTACACACAT
AAACTCCCAACTTTTTTTTCCAAACTACCAACTTTCCCTAAACTTTCAACTTTTTTTTTAGTAACTAAACATAGCCATAG
CTGCGAGTCTAATGTGGAGATCCCAGGAAAGTCAAAACCGNGGAGCCATTGNCTCCTAATACACTCATACATTCNTGCCT
GTGCCTTGGGAACCTTACCATAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis