Browse Element(s) Details


OsAffx.3985.1.S1_at

Description tigr:9632.m03216
TID=OsAffx.3985.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3355011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33510Os.5803.1.S1_at10/114+20088776..20092096expressed protein
LOC_Os04g33520Os.49614.1.S1_at11/114+20092973..20094589Root cap family protein, expressed
LOC_Os04g33530Os.50534.1.S1_at11/114+20096126..20098023Ser/Thr protein phosphatase family protein, expressed
LOC_Os04g33540OsAffx.14114.1.S1_at11/114+20098703..20099584hypothetical protein
LOC_Os04g33540OsAffx.27050.1.S1_x_at4/114+20098703..20099584hypothetical protein
LOC_Os04g33550OsAffx.3985.1.S1_at11/114+20103502..20104006hypothetical protein
LOC_Os04g33560OsAffx.14115.1.S1_at11/114+20117176..20118793expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3985.1.S1_at--399--3531Chr04:20103571..20103595 (25 bp)
CATGCAGCTTGTGCTCAGGGAGGCA
LOC_Os04g33550
OsAffx.3985.1.S1_at--486--8231Chr04:20103592..20103616 (25 bp)
GGCAAGATGCATTCCATCTCTTGTT
LOC_Os04g33550
OsAffx.3985.1.S1_at--1075--8791Chr04:20103613..20103637 (25 bp)
TGTTGCGACGGATGTGATTTCTCTC
LOC_Os04g33550
OsAffx.3985.1.S1_at--589--9951Chr04:20103648..20103672 (25 bp)
TACCATCCTATCACCGGGCGGGAAA
LOC_Os04g33550
OsAffx.3985.1.S1_at--915--10051Chr04:20103674..20103698 (25 bp)
TAGTCGTGGCAGTGGTTCTACCAGA
LOC_Os04g33550
OsAffx.3985.1.S1_at--160--8651Chr04:20103735..20103759 (25 bp)
TGGGCTAGGAGCTGGGCACCAACTT
LOC_Os04g33550
OsAffx.3985.1.S1_at--786--8251Chr04:20103749..20103773 (25 bp)
GGCACCAACTTGACCTGAGGCGGAG
LOC_Os04g33550
OsAffx.3985.1.S1_at--968--4091Chr04:20103774..20103798 (25 bp)
CGACGGCACGGCTGGATTTGCTGCA
LOC_Os04g33550
OsAffx.3985.1.S1_at--528--6351Chr04:20103814..20103838 (25 bp)
GATGCCATCATTACCTTCTCTAAGG
LOC_Os04g33550
OsAffx.3985.1.S1_at--1127--10531Chr04:20103829..20103853 (25 bp)
TTCTCTAAGGCCAGCACCTATTTGC
LOC_Os04g33550
OsAffx.3985.1.S1_at--916--10191Chr04:20103847..20103917 (25 bp)
TATTTGCCTCTGACGGGCGATGGCA
LOC_Os04g33550
Target Sequence 
CATGCAGCTTGTGCTCAGGGAGGCAAGATGCATTCCATCTCTTGTTGCGACGGATGTGATTTCTCTCCCCTCTCTCGTAC
CATCCTATCACCGGGCGGGAAAGTAGTCGTGGCAGTGGTTCTACCAGAGGCTATGGGGAAGGGGAGCGTGACCAGGAAGC
ACAGTGGGCTAGGAGCTGGGCACCAACTTGACCTGAGGCGGAGCGACGGCACGGCTGGATTTGCTGCAGCGACCACTCTC
CTCGATGCCATCATTACCTTCTCTAAGGCCAGCACCTATTTGCCTCTGACGGGCGATGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis