Browse Element(s) Details


OsAffx.14115.1.S1_at

Description tigr:9632.m03217
TID=OsAffx.14115.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3356011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33520Os.49614.1.S1_at11/114+20092973..20094589Root cap family protein, expressed
LOC_Os04g33530Os.50534.1.S1_at11/114+20096126..20098023Ser/Thr protein phosphatase family protein, expressed
LOC_Os04g33540OsAffx.14114.1.S1_at11/114+20098703..20099584hypothetical protein
LOC_Os04g33540OsAffx.27050.1.S1_x_at4/114+20098703..20099584hypothetical protein
LOC_Os04g33550OsAffx.3985.1.S1_at11/114+20103502..20104006hypothetical protein
LOC_Os04g33560OsAffx.14115.1.S1_at11/114+20117176..20118793expressed protein
LOC_Os04g33570Os.8120.1.S1_at11/114+20131641..20133997CEN-like protein 2, putative, expressed
LOC_Os04g33580OsAffx.4202.1.S1_at1/114+20140009..20141016hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14115.1.S1_at--778--951Chr04:20117218..20117242 (25 bp)
AGGACTGCGTGCTCCTTCTCGTTGT
LOC_Os04g33560
OsAffx.14115.1.S1_at--355--10571Chr04:20117233..20117257 (25 bp)
TTCTCGTTGTTCCTTACTCACCTTT
LOC_Os04g33560
OsAffx.14115.1.S1_at--124--6631Chr04:20117238..20117262 (25 bp)
GTTGTTCCTTACTCACCTTTTGCCT
LOC_Os04g33560
OsAffx.14115.1.S1_at--1009--2151Chr04:20117279..20117303 (25 bp)
ACAGCGACCGGTCTCGTAGCTTAGG
LOC_Os04g33560
OsAffx.14115.1.S1_at--1070--4211Chr04:20117286..20117310 (25 bp)
CCGGTCTCGTAGCTTAGGTAGTAGT
LOC_Os04g33560
OsAffx.14115.1.S1_at--721--10071Chr04:20117300..20117324 (25 bp)
TAGGTAGTAGTAGCCCAGCCTCTCG
LOC_Os04g33560
OsAffx.14115.1.S1_at--53--1551Chr04:20117415..20117439 (25 bp)
AGCATCTTCATCACAGCTCTCAGCT
LOC_Os04g33560
OsAffx.14115.1.S1_at--367--9531Chr04:20117432..20117455 (24 bp)
TCTCAGCTCCCTGCAGAGAGGAGGG
LOC_Os04g33560
OsAffx.14115.1.S1_at--1057--4131Chr04:20118230..20118254 (25 bp)
CGCTGCTGCTGAACCAGGAGAACCA
LOC_Os04g33560
OsAffx.14115.1.S1_at--119--8071Chr04:20118246..20118270 (25 bp)
GGAGAACCAGGCCTTGCTCACCGAG
LOC_Os04g33560
OsAffx.14115.1.S1_at--644--5851Chr04:20118321..20118345 (25 bp)
GACCAAGGCTAACGGCAACGGCAAC
LOC_Os04g33560
Target Sequence 
AGGACTGCGTGCTCCTTCTCGTTGTTCCTTACTCACCTTTTGCCTCTCGCTGCCTTGCCCCACAGCGACCGGTCTCGTAG
CTTAGGTAGTAGTAGCCCAGCCTCTCGCATCACTTCACACTCGCTGCCCACCCTGCCTCCTCTGGTGTCGCCGCTCGACC
TCTCTCGCCTCTCGTCTCCAACTCCCCAGCAGCGAGCAGCATCTTCATCACAGCTCTCAGCTCCCTGCAGAGAGGAGGGC
ACAAGATGGACAGGCTGAACGCGAAGCTGTACCTGCAGAACTGCTACATCATGAAGGAGAACGAGCGGCTGCGCAAGAAG
GCGCTGCTGCTGAACCAGGAGAACCAGGCCTTGCTCACCGAGCTCAAGCAGCGGCTCGCCAAGACGAAGGCGGCGGCGGC
GGCGGCGGCCGCGACCAAGGCTAACGGCAACGGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis