Browse Element(s) Details


Os.5819.1.S1_at

Description gb:AK072672.1
DB_XREF= gi:32982695
TID=Os.5819.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5819 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023138M09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138M09, full insert sequence.
FL= gb:AK072672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2660011/11Soluble inorganic pyrophosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26560OsAffx.20357.1.S1_at11/1110+13511726..13517239expressed protein
LOC_Os10g26570Os.17997.1.S1_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed
LOC_Os10g26570Os.17997.2.S1_x_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed
LOC_Os10g26590OsAffx.6775.1.S1_at11/1110+13531523..13532206AP2 domain containing protein
LOC_Os10g26590OsAffx.6775.1.S1_x_at11/1110+13531523..13532206AP2 domain containing protein
LOC_Os10g26600Os.5819.1.S1_at11/1110+13535705..13537787Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os10g26610Os.5143.1.S1_at11/1110+13538758..13543896expressed protein
LOC_Os10g26620Os.5736.1.S1_s_at11/1110+13551049..13553774Dof domain, zinc finger family protein, expressed
LOC_Os10g26620Os.5736.2.S1_x_at11/1110+13551049..13553774Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016020cellular_componentmembrane
GO:0016462molecular_functionpyrophosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5819.1.S1_at--884--6131Chr10:13536448..13536472 (25 bp)
GAGGTCGCCGTAAACGATTTCCTGC
LOC_Os10g26600
Os.5819.1.S1_at--944--6991Chr10:13536217..13536419 (25 bp)
GTACTCCATGGATCTTTATGCTGAA
LOC_Os10g26600
Os.5819.1.S1_at--500--5231Chr10:13536195..13536219 (25 bp)
GAATATATCCTGCACAGCCTGAGGC
LOC_Os10g26600
Os.5819.1.S1_at--919--391Chr10:13536140..13536164 (25 bp)
ATCAGACCCTGATCTCATGAAGAAA
LOC_Os10g26600
Os.5819.1.S1_at--163--2851Chr10:13536105..13536129 (25 bp)
AAGTCTCTTGGGTGATGCTCTTTTT
LOC_Os10g26600
Os.5819.1.S1_at--1025--6771Chr10:13535997..13536021 (25 bp)
GTTACTGTTATTGCTTGCACGCAAA
LOC_Os10g26600
Os.5819.1.S1_at--283--731Chr10:13535971..13535995 (25 bp)
ATGTTGGTCCAACTAGCTTCAGGCC
LOC_Os10g26600
Os.5819.1.S1_at--181--4911Chr10:13535956..13535980 (25 bp)
GCTTCAGGCCGAATCATCGATGCAT
LOC_Os10g26600
Os.5819.1.S1_at--757--2251Chr10:13535892..13535916 (25 bp)
AAATATTGTATGATGCCCTGTGTAA
LOC_Os10g26600
Os.5819.1.S1_at--38--10251Chr10:13535853..13535877 (25 bp)
TTTGGTTTCTAATTGGCGACTGCTA
LOC_Os10g26600
Os.5819.1.S1_at--638--6911Chr10:13535825..13535849 (25 bp)
GTATGACGTCAATTTTCCAGAATGG
LOC_Os10g26600
Target Sequence 
GAGGTCGCCGTAAACGATTTCCTGCCACCGGCAACTGCTCAGGAGGCCATCAAGTACTCCATGGATCTTTATGCTGAATA
TATCCTGCACAGCCTGAGGCGCTAATTAATTATCATCGTCAGATGGAGCAATCAGACCCTGATCTCATGAAGAAAATAAC
AATAAAAGTCTCTTGGGTGATGCTCTTTTTGAGCAGCCATTTTTGCATTATATTTGAAACAAGGGATAATATTATGTTTC
TGCATTTGTGCAGAATATATGCAAATCAATAATGTTACTGTTATTGCTTGCACGCAAATATGTTGGTCCAACTAGCTTCA
GGCCGAATCATCGATGCATGACCGGTGATAAATGGTGTAATTTTGGACTACAGGTGATAAATATTGTATGATGCCCTGTG
TAATATATGTGATTGTATTTGGTTTCTAATTGGCGACTGCTAATTGTATGACGTCAATTTTCCAGAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis