Browse Element(s) Details


Os.5736.1.S1_s_at

Description gb:AK068588.1
DB_XREF= gi:32978605
TID=Os.5736.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative H-protein promoter binding factor-2a (OSJNBa0060A14.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152P10, full insert sequence.
FL= gb:AK068588.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2662011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26590OsAffx.6775.1.S1_at11/1110+13531523..13532206AP2 domain containing protein
LOC_Os10g26590OsAffx.6775.1.S1_x_at11/1110+13531523..13532206AP2 domain containing protein
LOC_Os10g26600Os.5819.1.S1_at11/1110+13535705..13537787Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os10g26610Os.5143.1.S1_at11/1110+13538758..13543896expressed protein
LOC_Os10g26620Os.5736.1.S1_s_at11/1110+13551049..13553774Dof domain, zinc finger family protein, expressed
LOC_Os10g26620Os.5736.2.S1_x_at11/1110+13551049..13553774Dof domain, zinc finger family protein, expressed
LOC_Os10g26630Os.15231.1.S1_at11/1110+13564752..13569346glycosyl transferase family 2 protein, putative, expressed
LOC_Os10g26640OsAffx.30547.1.S1_at11/1110+13573666..13575177complex 1 family protein, putative, expressed
LOC_Os10g26640Os.39123.2.S1_s_at11/1110+13573666..13575177complex 1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5736.1.S1_s_at--294--10671Chr10:13551447..13551471 (25 bp)
TTCCAGGAGGGATCTTGAAGGCCAT
LOC_Os10g26620
Os.5736.1.S1_s_at--1158--2811Chr10:13551364..13551388 (25 bp)
AAGTTAGTAGCCTGACAGTGCTGAT
LOC_Os10g26620
Os.5736.1.S1_s_at--170--5251Chr10:13551331..13551355 (25 bp)
GAATCAGACAGAGTATTTGTATACT
LOC_Os10g26620
Os.5736.1.S1_s_at--883--7431Chr10:13551289..13551313 (25 bp)
GTGTATGACATAGCTACTTGTGGAG
LOC_Os10g26620
Os.5736.1.S1_s_at--662--9871Chr10:13551275..13551299 (25 bp)
TACTTGTGGAGATATAGTTGTAACC
LOC_Os10g26620
Os.5736.1.S1_s_at--1138--1231Chr10:13551260..13551284 (25 bp)
AGTTGTAACCATAGGTAGCATGTAA
LOC_Os10g26620
Os.5736.1.S1_s_at--163--10011Chr10:13551202..13551226 (25 bp)
TAGCTAGTATTTGGGTTTGGAGCCA
LOC_Os10g26620
Os.5736.1.S1_s_at--37--5871Chr10:13551183..13551207 (25 bp)
GAGCCAGGAGATAAGTAAGGCCCCT
LOC_Os10g26620
Os.5736.1.S1_s_at--109--4211Chr10:13551164..13551188 (25 bp)
GCCCCTGGTTTTGTAGATAAATAAG
LOC_Os10g26620
Os.5736.1.S1_s_at--62--10051Chr10:13551132..13551156 (25 bp)
TAGATGGAATATATGGCTTGAGGTA
LOC_Os10g26620
Os.5736.1.S1_s_at--949--851Chr10:13551120..13551144 (25 bp)
ATGGCTTGAGGTATTTCATTTCTTC
LOC_Os10g26620
Target Sequence 
TTCCAGGAGGGATCTTGAAGGCCATCTTGCAAGATTTTTTTTTTTTTGCCTTCATCCTCTCTGCTGCTTCTGAACTGAAC
ACGAAGTTAGTAGCCTGACAGTGCTGATTTTTTTGTGAATCAGACAGAGTATTTGTATACTAGGGGTATTTGGGGGAAGT
GTATGACATAGCTACTTGTGGAGATATAGTTGTAACCATAGGTAGCATGTAAATACTATTTAGAAAATAGCTGTTTAAAT
GGATATAGCTAGTATTTGGGTTTGGAGCCAGGAGATAAGTAAGGCCCCTGGTTTTGTAGATAAATAAGAATCAATTAGAT
GGAATATATGGCTTGAGGTATTTCATTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5736.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis