Browse Element(s) Details


Os.39123.2.S1_s_at

Description gb:AU057243
DB_XREF= gi:4716127
DB_XREF=AU057243
CLONE=S21270_2Z
TID=Os.39123.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.39123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative CGI-203 homolog (OSJNBa0060A14.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2664011/11complex 1 family protein, putative, expressed
LOC_Os08g140704/11complex 1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26620Os.5736.1.S1_s_at11/1110+13551049..13553774Dof domain, zinc finger family protein, expressed
LOC_Os10g26620Os.5736.2.S1_x_at11/1110+13551049..13553774Dof domain, zinc finger family protein, expressed
LOC_Os10g26630Os.15231.1.S1_at11/1110+13564752..13569346glycosyl transferase family 2 protein, putative, expressed
LOC_Os10g26640OsAffx.30547.1.S1_at11/1110+13573666..13575177complex 1 family protein, putative, expressed
LOC_Os10g26640Os.39123.2.S1_s_at11/1110+13573666..13575177complex 1 family protein, putative, expressed
LOC_Os10g26650OsAffx.29757.1.S1_x_at11/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_x_at7/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.4.S1_x_at5/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_at3/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26660Os.20158.1.S1_s_at11/1110+13588501..13594205expressed protein
LOC_Os10g26670OsAffx.30548.1.S1_at11/1110+13596953..13598170expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39123.2.S1_s_at--247--10591Chr10:13574145..13574169 (25 bp)
TTCTCTAGCGCACGAACAGCATCCG
LOC_Os10g26640
Os.39123.2.S1_s_at--1027--551Chr10:13574125..13574149 (25 bp)
ATCCGTGACGAAGCGCATCCATGGC
LOC_Os10g26640
Os.39123.2.S1_s_at--786--571Chr10:13574109..13574133 (25 bp)
ATCCATGGCGGCAGCACCGACGAGA
LOC_Os10g26640
Os.39123.2.S1_s_at--803--1371Chr10:13574087..13574111 (25 bp)
AGAGCGGAGGCGCTGTCCCTCTTCC
LOC_Os10g26640
Os.39123.2.S1_s_at--860--9292Chr08:8418152..8418176 (25 bp)
TCCGCACGGCAAGGCAGTTCTCTGA
LOC_Os08g14070
Os.39123.2.S1_s_at--773--2932Chr08:8418162..8418186 (25 bp)
AAGGCAGTTCTCTGACTACAACATC
LOC_Os08g14070
Os.39123.2.S1_s_at--851--9512Chr08:8418170..8418194 (25 bp)
TCTCTGACTACAACATCCGCGAGTA
LOC_Os08g14070
Os.39123.2.S1_s_at--973--8072Chr08:8418213..8418237 (25 bp)
GGACGCCTTCCGTGAGAACCGTGCC
LOC_Os08g14070
Os.39123.2.S1_s_at--1058--1431Chr10:13573978..13574002 (25 bp)
AGAACCGTGCCCTCGGCGATGCGGT
LOC_Os10g26640
Os.39123.2.S1_s_at--1118--5391Chr10:13573845..13573869 (25 bp)
GAAGCTGCAGTGATCGGTGCAACTA
LOC_Os10g26640
Os.39123.2.S1_s_at--419--1971Chr10:13573818..13573842 (25 bp)
ACTGAGATGTTATTATGTTTGCTAG
LOC_Os10g26640
Target Sequence 
TTCTCTAGCGCACGAACAGCATCCGTGACGAAGCGCATCCATGGCGGCAGCACCGACGAGAGCGGAGGCGCTGTCCCTCT
TCCGGTCCCTCCTCCGCACGGCAAGGCAGTTCTCTGACTACAACATCCGCGAGTACGCGCGCCGCCGCGCCGCGGACGCC
TTCCGTGAGAACCGTGCCCTCGGCGATGCGGTTGCCGCGGCGGCAGTGTTCGCGGACGGGAAGAAGCAGCTGGAGGTGGC
AAAGCGGCAGGCGGTGGTGTACTCTCTGTACGCCCCAAAGGCCAAGAGCATCATGGAGATGAAGCTGCAGTGATCGGTGC
AACTAAAACTGAGATGTTATTATGTTTGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39123.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis