Browse Element(s) Details


Os.20158.1.S1_s_at

Description gb:AK065200.1
DB_XREF= gi:32975218
TID=Os.20158.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20158 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002E22, full insert sequence.
FL= gb:AK065200.1 gb:AK065034.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2666011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26630Os.15231.1.S1_at11/1110+13564752..13569346glycosyl transferase family 2 protein, putative, expressed
LOC_Os10g26640OsAffx.30547.1.S1_at11/1110+13573666..13575177complex 1 family protein, putative, expressed
LOC_Os10g26640Os.39123.2.S1_s_at11/1110+13573666..13575177complex 1 family protein, putative, expressed
LOC_Os10g26650OsAffx.29757.1.S1_x_at11/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_x_at7/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.4.S1_x_at5/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_at3/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26660Os.20158.1.S1_s_at11/1110+13588501..13594205expressed protein
LOC_Os10g26670OsAffx.30548.1.S1_at11/1110+13596953..13598170expressed protein
LOC_Os10g26680Os.11818.1.S1_at11/1110+13601475..13603859Pectinesterase family protein, expressed
LOC_Os10g26680Os.39588.1.A1_x_at2/1110+13601475..13603859Pectinesterase family protein, expressed
LOC_Os10g26690Os.46494.1.S1_at11/1110+13606147..13608140ribosomal protein L32 containing protein, expressed
LOC_Os10g26700Os.9009.1.S1_x_at11/1110+13608611..13609669YGL010w, putative, expressed
LOC_Os10g26700Os.9009.1.S1_at11/1110+13608611..13609669YGL010w, putative, expressed
LOC_Os10g26710OsAffx.6776.1.S1_at11/1110+13610669..13611054hypothetical protein
LOC_Os10g26720Os.51603.1.S1_at1/1110+13614800..13620101exonuclease family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20158.1.S1_s_at--349--5051Chr10:13591495..13591519 (25 bp)
GCAGAATATATTTGGCCAGCTCTAC
LOC_Os10g26660
Os.20158.1.S1_s_at--259--3711Chr10:13591516..13591540 (25 bp)
CTACTTTTGCCCGTAGCTGGAAAGA
LOC_Os10g26660
Os.20158.1.S1_s_at--789--2411Chr10:13592094..13592118 (25 bp)
AAAAATGCCTCCTGAGCTTGCAAAT
LOC_Os10g26660
Os.20158.1.S1_s_at--586--5131Chr10:13592113..13592137 (25 bp)
GCAAATGCACTCTCCCATGAACGAG
LOC_Os10g26660
Os.20158.1.S1_s_at--727--10751Chr10:13592144..13592168 (25 bp)
TTGAGAACTCTGAAATTCGGCAACA
LOC_Os10g26660
Os.20158.1.S1_s_at--301--10611Chr10:13592159..13592183 (25 bp)
TTCGGCAACAGGCACTTGAGGCTAT
LOC_Os10g26660
Os.20158.1.S1_s_at--1122--8291Chr10:13592178..13592202 (25 bp)
GGCTATTTATATGATTGTCCTTCAG
LOC_Os10g26660
Os.20158.1.S1_s_at--77--3211Chr10:13593047..13593071 (25 bp)
CAATGGTCCGCGAATACTGCAGGTT
LOC_Os10g26660
Os.20158.1.S1_s_at--1096--6791Chr10:13594108..13594132 (25 bp)
GTTTTTCCCTGGCTTAAAGCTATCA
LOC_Os10g26660
Os.20158.1.S1_s_at--1108--2691Chr10:13594124..13594148 (25 bp)
AAGCTATCAAGAGTTCTCCATACAA
LOC_Os10g26660
Os.20158.1.S1_s_at--108--2491Chr10:13594178..13594202 (25 bp)
AACAGAGCAATTTGCCCACTTTTCA
LOC_Os10g26660
Target Sequence 
GCAGAATATATTTGGCCAGCTCTACTTTTGCCCGTAGCTGGAAAGAAGATCTACAGTGAAGAAGATAGATCAAAAAATGC
CTCCTGAGCTTGCAAATGCACTCTCCCATGAACGAGAGGCTGTTGAGAACTCTGAAATTCGGCAACAGGCACTTGAGGCT
ATTTATATGATTGTCCTTCAGGATGAAGGACGAAGGGCTTTTTGGTCAGTCAATGGTCCGCGAATACTGCAGGTTGGTTA
TGAAGACGAGGAGGACCCAAAAGTGATGGAAGCATACGAGTTAATTGGATCTCTGCTTGTTGGCAAGGGTGATGATGAGC
AAGATCAAGAACAAGGAGGACAGAAGCCTTAATTTCTGCTGTTTAGAAAAAAAAAATTCAGTCCTCCATCGTGTACAATA
TTCTTCTATTTATCAGTTGTTGCAAAAACTGGGCTACATTGCAATGCTACCGTAATCAATTGTTGTATTATGGACAAAAT
TTTTTTGCACCATTTGGCAGGTTTTTCCCTGGCTTAAAGCTATCAAGAGTTCTCCATACAATTATGTAAGAACATGGAGA
ANTATGCATAAACAGAGCAATTTGCCCACTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20158.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis