Browse Element(s) Details


Os.39588.1.A1_x_at

Description gb:CF312421
DB_XREF= gi:33684182
DB_XREF=ABF--08-C22.b1
CLONE=ABF--08-C22
TID=Os.39588.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39588 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g266802/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26650OsAffx.29757.1.S1_x_at11/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_x_at7/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.4.S1_x_at5/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_at3/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26660Os.20158.1.S1_s_at11/1110+13588501..13594205expressed protein
LOC_Os10g26670OsAffx.30548.1.S1_at11/1110+13596953..13598170expressed protein
LOC_Os10g26680Os.11818.1.S1_at11/1110+13601475..13603859Pectinesterase family protein, expressed
LOC_Os10g26680Os.39588.1.A1_x_at2/1110+13601475..13603859Pectinesterase family protein, expressed
LOC_Os10g26690Os.46494.1.S1_at11/1110+13606147..13608140ribosomal protein L32 containing protein, expressed
LOC_Os10g26700Os.9009.1.S1_x_at11/1110+13608611..13609669YGL010w, putative, expressed
LOC_Os10g26700Os.9009.1.S1_at11/1110+13608611..13609669YGL010w, putative, expressed
LOC_Os10g26710OsAffx.6776.1.S1_at11/1110+13610669..13611054hypothetical protein
LOC_Os10g26720Os.51603.1.S1_at1/1110+13614800..13620101exonuclease family protein, expressed
LOC_Os10g26730Os.11312.1.S1_s_at11/1110+13623053..13626656exonuclease family protein, putative, expressed
LOC_Os10g26730Os.11312.1.S1_at11/1110+13623053..13626656exonuclease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009860biological_processpollen tube growth
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39588.1.A1_x_at--795--8211NONE
GGCAATAAAAGTACCAGTTTCAGCA
NONE
Os.39588.1.A1_x_at--472--2331NONE
AAAGTACCAGTTTCAGCATAGTTTA
NONE
Os.39588.1.A1_x_at--1015--6971NONE
GTACCAGTTTCAGCATAGTTTAATC
NONE
Os.39588.1.A1_x_at--40--1211NONE
AGTTTCAGCATAGTTTAATCCCAGG
NONE
Os.39588.1.A1_x_at--1008--10511NONE
TTCAGCATAGTTTAATCCCAGGATT
NONE
Os.39588.1.A1_x_at--1086--3031Chr10:13601642..13601665 (24 bp)
AATCCCAGGATTGTAGTTCATCCCC
LOC_Os10g26680
Os.39588.1.A1_x_at--830--10251NONE
TTATAAGGGTAACATTTGGTCAACT
NONE
Os.39588.1.A1_x_at--805--5271NONE
TAAGGGTAACATTTGGTCAACTTGG
NONE
Os.39588.1.A1_x_at--1069--10231NONE
TTTGGTCAACTTGGGCCCCCGCAAT
NONE
Os.39588.1.A1_x_at--276--7571NONE
GGGCCCCCGCAATTGTATTGAGGAA
NONE
Os.39588.1.A1_x_at--656--8811Chr10:13601519..13601543 (25 bp)
TGTTGTTTTCCATGAGCCTTGTCCC
LOC_Os10g26680
Target Sequence 
GGCAATAAAAGTACCAGTTTCAGCATAGTTTAATCCCAGGATTGTAGTTCATCCCCCCCCCCTAGTTTATTTTAAAAAAA
ATTTTGGAGGGGGTATTATAAGGGTAACATTTGGTCAACTTGGGCCCCCGCAATTGTATTGAGGAAAAATATTTGTTGTT
TTCCATGAGCCTTGTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39588.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis