Browse Element(s) Details


Os.11818.1.S1_at

Description gb:AK101494.1
DB_XREF= gi:32986703
TID=Os.11818.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pectin methylesterase (OSJNBa0060A14.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043C06, full insert sequence.
FL= gb:AK101494.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2668011/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26650OsAffx.29757.1.S1_x_at11/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_x_at7/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.4.S1_x_at5/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_at3/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26660Os.20158.1.S1_s_at11/1110+13588501..13594205expressed protein
LOC_Os10g26670OsAffx.30548.1.S1_at11/1110+13596953..13598170expressed protein
LOC_Os10g26680Os.11818.1.S1_at11/1110+13601475..13603859Pectinesterase family protein, expressed
LOC_Os10g26680Os.39588.1.A1_x_at2/1110+13601475..13603859Pectinesterase family protein, expressed
LOC_Os10g26690Os.46494.1.S1_at11/1110+13606147..13608140ribosomal protein L32 containing protein, expressed
LOC_Os10g26700Os.9009.1.S1_x_at11/1110+13608611..13609669YGL010w, putative, expressed
LOC_Os10g26700Os.9009.1.S1_at11/1110+13608611..13609669YGL010w, putative, expressed
LOC_Os10g26710OsAffx.6776.1.S1_at11/1110+13610669..13611054hypothetical protein
LOC_Os10g26720Os.51603.1.S1_at1/1110+13614800..13620101exonuclease family protein, expressed
LOC_Os10g26730Os.11312.1.S1_s_at11/1110+13623053..13626656exonuclease family protein, putative, expressed
LOC_Os10g26730Os.11312.1.S1_at11/1110+13623053..13626656exonuclease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009860biological_processpollen tube growth
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11818.1.S1_at--251--6771Chr10:13602334..13602358 (25 bp)
GTTACATTACTGCTCACAGCCGGAA
LOC_Os10g26680
Os.11818.1.S1_at--372--1471Chr10:13602317..13602341 (25 bp)
AGCCGGAAATCCTCATCAGAAACTA
LOC_Os10g26680
Os.11818.1.S1_at--868--6491Chr10:13602074..13602098 (25 bp)
GATATATGTTCCTGGGTCGGCCTTG
LOC_Os10g26680
Os.11818.1.S1_at--64--7151Chr10:13602030..13602054 (25 bp)
GTCTTTGCGCACACTTTTATGGATC
LOC_Os10g26680
Os.11818.1.S1_at--999--6391Chr10:13602009..13602033 (25 bp)
GATCGTTGTATTAAGCCTGCTGGGT
LOC_Os10g26680
Os.11818.1.S1_at--633--5451Chr10:13601958..13601982 (25 bp)
GAACGAACTGCTTGCTTCTTTGAGT
LOC_Os10g26680
Os.11818.1.S1_at--565--7011Chr10:13601813..13601834 (22 bp)
GTACAGGTGCTCAGGGCCAGGTTTC
LOC_Os10g26680
Os.11818.1.S1_at--1124--4531Chr10:13601787..13601811 (25 bp)
GCCCATCAAACCGAGTGGCTTGGTG
LOC_Os10g26680
Os.11818.1.S1_at--1094--1431Chr10:13601736..13601760 (25 bp)
AGAATTTCCTTTCTCACTCTTTCAT
LOC_Os10g26680
Os.11818.1.S1_at--769--271Chr10:13601697..13601721 (25 bp)
ATAGGCCTTGGCTCATCCAGATGAT
LOC_Os10g26680
Os.11818.1.S1_at--236--5871Chr10:13601506..13601530 (25 bp)
GAGCCTTGTCCCTTGAGGACTATAA
LOC_Os10g26680
Target Sequence 
GTTACATTACTGCTCACAGCCGGAAATCCTCATCAGAAACTACTGGTTATGTGTTCTTGAGGTGTATTATTACTGGAAAT
GGAGAAGCTGGATATATGTTCCTGGGTCGGCCTTGGGGACCGTTTGGAAGGGNTTGTCTTTGCGCACACTTTTATGGATC
GTTGTATTAAGCCTGCTGGGTGGCATAATTGGGACAGATCTGAGAATGAACGAACTGCTTGCTTCTTTGAGTACAGGTGC
TCAGGGCCAGGTTTCCGCCCATCAAACCGAGTGGCTTGGTGTAGACAATTGCTTGATGTTGAAGTGGAGAATTTCCTTTC
TCACTCTTTCATTGATCCAGACCTTGATAGGCCTTGGCTCATCCAGATGATGGCAATAAAAGTACCAGTCTCAGCATAGT
CTAATCCCAGGATTGTAGTTCATCCCTCCTCCCTAGTCTATCTTATAAATAATTTTGGAGGGTGTATTATAAGTGTAACA
TTTGGTCAACTTGTGCCCACGCAATTGTATTGAGGAGAGATATTTGTTGTTTTCCATGAGCCTTGTCCCTTGAGGACTAT
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis