Browse Element(s) Details


Os.51603.1.S1_at

Description gb:AK063151.1
DB_XREF= gi:32973169
TID=Os.51603.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51603 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-H07, full insert sequence.
FL= gb:AK063151.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1022011/11expressed protein
LOC_Os10g267201/11exonuclease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10170OsAffx.19584.1.S1_at11/1112+5373910..5374727O-methyltransferase family protein, expressed
LOC_Os12g10180OsAffx.19585.1.S1_at11/1112+5375855..5382028NB-ARC domain containing protein, expressed
LOC_Os12g10190Os.49409.1.S1_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190Os.49409.1.S1_s_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190OsAffx.19586.1.S1_at2/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10200Os.39074.1.A1_at11/1112+5390908..5393891expressed protein
LOC_Os12g10210NANA12+5394889..5395308hypothetical protein
LOC_Os12g10220Os.51603.1.S1_at11/1112+5398038..5400311expressed protein
LOC_Os12g10230OsAffx.7547.1.S1_at11/1112+5400799..5401182hypothetical protein
LOC_Os12g10240OsAffx.31677.1.S1_x_at5/1112+5410785..5411208amino acid carrier, putative
LOC_Os12g10250OsAffx.31678.3.S1_x_at11/1112+5414947..5416660zinc finger family protein, putative, expressed
LOC_Os12g10260OsAffx.31678.1.S1_at11/1112+5420044..5422532hAT family dimerisation domain containing protein
LOC_Os12g10260OsAffx.31678.3.S1_x_at1/1112+5420044..5422532hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0004527molecular_functionexonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51603.1.S1_at--241--2091Chr12:5398190..5398214 (25 bp)
ACATCCGCATAGACGACGACTTGGT
LOC_Os12g10220
Os.51603.1.S1_at--10--1851Chr12:5398205..5398229 (25 bp)
ACGACTTGGTGGAGTACGTCAACTT
LOC_Os12g10220
Os.51603.1.S1_at--999--6071Chr12:5398216..5398240 (25 bp)
GAGTACGTCAACTTTGGCGCCGTCG
LOC_Os12g10220
Os.51603.1.S1_at--14--8351Chr12:5398245..5398264 (20 bp)
GGCTGGAACGGCCTATTTCGAAAAG
LOC_Os12g10220
Os.51603.1.S1_at--192--2731Chr12:5400120..5400144 (25 bp)
AAGAACAAGGGCGTCGTCTACCAGT
LOC_Os12g10220
Os.51603.1.S1_at--401--7211Chr12:5400132..5400156 (25 bp)
GTCGTCTACCAGTTCTGATAGATAT
LOC_Os12g10220
Os.51603.1.S1_at--397--10171Chr12:5400173..5400197 (25 bp)
TATAACATATAGCTACCGCACGCCA
LOC_Os12g10220
Os.51603.1.S1_at--344--9971Chr12:5400186..5400210 (25 bp)
TACCGCACGCCACATGTGTTCATGT
LOC_Os12g10220
Os.51603.1.S1_at--289--9631Chr12:5400205..5400229 (25 bp)
TCATGTGTGTGCTTGGTTGTACTCC
LOC_Os12g10220
Os.51603.1.S1_at--724--8751Chr12:5400222..5400246 (25 bp)
TGTACTCCCGATCTCTTATCTAAGG
LOC_Os12g10220
Os.51603.1.S1_at--501--7492Chr12:5400280..5400304 (25 bp)
GTGGTAATTAATACTCCATTCGTTT
LOC_Os12g10220
Target Sequence 
ACATCCGCATAGACGACGACTTGGTGGAGTACGTCAACTTTGGCGCCGTCGCTCAGGCTGGAACGGCCTATTTCGAAAAG
AAGTACGAGGCGGCAACCGGGGAGAAGGCGGCGGACAAGGTGGTGAGGTTGATCGGCAAGGAGGAGACCAAGGATCGGGA
CCAGGAGGAGAAGAACAAGGGCGTCGTCTACCAGTTCTGATAGATATCAATCAATCATGCATGTATAACATATAGCTACC
GCACGCCACATGTGTTCATGTGTGTGCTTGGTTGTACTCCCGATCTCTTATCTAAGGCAAGTACTATATGTTTTGAATAA
GTGGCATGCAGTGGTAATTAATACTCCATTCGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis