Browse Element(s) Details


OsAffx.19586.1.S1_at

Description tigr:9640.m00956
TID=OsAffx.19586.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g101902/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10140OsAffx.31676.1.S1_at11/1112+5363419..5364800O-methyltransferase family protein
LOC_Os12g10150NANA12+5368912..5369148hypothetical protein
LOC_Os12g10160NANA12+5370262..5371146hypothetical protein
LOC_Os12g10170OsAffx.19584.1.S1_at11/1112+5373910..5374727O-methyltransferase family protein, expressed
LOC_Os12g10180OsAffx.19585.1.S1_at11/1112+5375855..5382028NB-ARC domain containing protein, expressed
LOC_Os12g10190Os.49409.1.S1_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190Os.49409.1.S1_s_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190OsAffx.19586.1.S1_at2/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10200Os.39074.1.A1_at11/1112+5390908..5393891expressed protein
LOC_Os12g10210NANA12+5394889..5395308hypothetical protein
LOC_Os12g10220Os.51603.1.S1_at11/1112+5398038..5400311expressed protein
LOC_Os12g10230OsAffx.7547.1.S1_at11/1112+5400799..5401182hypothetical protein
LOC_Os12g10240OsAffx.31677.1.S1_x_at5/1112+5410785..5411208amino acid carrier, putative
LOC_Os12g10250OsAffx.31678.3.S1_x_at11/1112+5414947..5416660zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19586.1.S1_at--217--3011Chr12:5389912..5389936 (25 bp)
AATGACCAGCCAACAGTACCTGGCC
LOC_Os12g10190
OsAffx.19586.1.S1_at--554--1691Chr12:5389919..5389943 (25 bp)
AGCCAACAGTACCTGGCCGCGCTTG
LOC_Os12g10190
OsAffx.19586.1.S1_at--322--3811Chr12:5390677..5390701 (25 bp)
CTCCTGGAGCATGAGAAACTGAGCT
NONE
OsAffx.19586.1.S1_at--751--3851Chr12:5390695..5390719 (25 bp)
CTGAGCTGGATCCAAAGGAGAAAAA
NONE
OsAffx.19586.1.S1_at--1105--5351Chr12:5390720..5390744 (25 bp)
GAAGAGTTGCTTTGGTGGTGCTTGT
NONE
OsAffx.19586.1.S1_at--581--8611Chr12:5390735..5390759 (25 bp)
TGGTGCTTGTGTGGTTCTGCATCAA
NONE
OsAffx.19586.1.S1_at--729--8671Chr12:5390742..5390766 (25 bp)
TGTGTGGTTCTGCATCAAGTCGATG
NONE
OsAffx.19586.1.S1_at--451--2571Chr12:5390770..5390794 (25 bp)
AACGGAATGATTCAGAAGGCTATGG
NONE
OsAffx.19586.1.S1_at--1051--5291Chr12:5390784..5390808 (25 bp)
GAAGGCTATGGTACATCTTGCGAGT
NONE
OsAffx.19586.1.S1_at--1139--6991Chr12:5390794..5390818 (25 bp)
GTACATCTTGCGAGTGAACCCTTGC
NONE
OsAffx.19586.1.S1_at--141--4631Chr12:5390803..5390827 (25 bp)
GCGAGTGAACCCTTGCCGATGGCCA
NONE
Target Sequence 
AATGACCAGCCAACAGTACCTGGCCGCGCTTGCTGCTCAGTGCGCGTCGCGAATCCTTGTGGCATAAGGAAGAAGGGGTC
ATCACACTCGCTCATACCACAGTTTGGTGCGACCGATTTGAGGAGCACTGTTGAAGCTACTGATCATAACGACTCACCAG
ACAGGCATGATGAGAACAAGAACCCAGAAGTCAAGGACGGCATGAACCATGGGAGGAAGTACAGAAGGATCCACCACTCA
GGGCCATTGATGCCGCCAGGAGGGAACGTTGAGGACATGCTCAAGGAGCACGAGAGGCAGATCCAAGAAGCCGTTCGCAA
GGCGCGTGTCAGCAAGCCAGGCAGCCCTGCTCTCCTGGAGCATGAGAAACTGAGCTGGATCCAAAGGAGAAAAAGAAGAG
TTGCTTTGGTGGTGCTTGTGTGGTTCTGCATCAAGTCGATGGAAAACGGAATGATTCAGAAGGCTATGGTACATCTTGCG
AGTGAACCCTTGCCGATGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis