Browse Element(s) Details


Os.49409.1.S1_s_at

Description gb:AK100360.1
DB_XREF= gi:32985569
TID=Os.49409.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083L23, full insert sequence.
FL= gb:AK100360.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1019011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10140OsAffx.31676.1.S1_at11/1112+5363419..5364800O-methyltransferase family protein
LOC_Os12g10150NANA12+5368912..5369148hypothetical protein
LOC_Os12g10160NANA12+5370262..5371146hypothetical protein
LOC_Os12g10170OsAffx.19584.1.S1_at11/1112+5373910..5374727O-methyltransferase family protein, expressed
LOC_Os12g10180OsAffx.19585.1.S1_at11/1112+5375855..5382028NB-ARC domain containing protein, expressed
LOC_Os12g10190Os.49409.1.S1_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190Os.49409.1.S1_s_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190OsAffx.19586.1.S1_at2/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10200Os.39074.1.A1_at11/1112+5390908..5393891expressed protein
LOC_Os12g10210NANA12+5394889..5395308hypothetical protein
LOC_Os12g10220Os.51603.1.S1_at11/1112+5398038..5400311expressed protein
LOC_Os12g10230OsAffx.7547.1.S1_at11/1112+5400799..5401182hypothetical protein
LOC_Os12g10240OsAffx.31677.1.S1_x_at5/1112+5410785..5411208amino acid carrier, putative
LOC_Os12g10250OsAffx.31678.3.S1_x_at11/1112+5414947..5416660zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49409.1.S1_s_at--307--3571Chr12:5390004..5390028 (25 bp)
CATACCACAGTTTGGTGCGACCGAT
LOC_Os12g10190
Os.49409.1.S1_s_at--658--4371Chr12:5390008..5390032 (25 bp)
CCACAGTTTGGTGCGACCGATTTGA
LOC_Os12g10190
Os.49409.1.S1_s_at--149--5831Chr12:5390022..5390046 (25 bp)
GACCGATTTGAGGAGCACTGTTGAA
LOC_Os12g10190
Os.49409.1.S1_s_at--749--5391Chr12:5390044..5390068 (25 bp)
GAAGCTACTGATCATAACGACTCAC
LOC_Os12g10190
Os.49409.1.S1_s_at--467--9791Chr12:5390058..5390082 (25 bp)
TAACGACTCACCAGACAGGCATGAT
LOC_Os12g10190
Os.49409.1.S1_s_at--740--9671Chr12:5390065..5390089 (25 bp)
TCACCAGACAGGCATGATGAGAACA
LOC_Os12g10190
Os.49409.1.S1_s_at--947--1151Chr12:5390258..5390282 (25 bp)
AGTACAGAAGGATCCACCACTCAGG
LOC_Os12g10190
Os.49409.1.S1_s_at--652--11Chr12:5390286..5390310 (25 bp)
ATTGATGCCGCCAGGAGGGAACGTT
LOC_Os12g10190
Os.49409.1.S1_s_at--752--6131Chr12:5390300..5390324 (25 bp)
GAGGGAACGTTGAGGACATGCTCAA
LOC_Os12g10190
Os.49409.1.S1_s_at--548--3211Chr12:5390322..5390346 (25 bp)
CAAGGAGCACGAGAGGCAGATCCAA
LOC_Os12g10190
Os.49409.1.S1_s_at--985--5031Chr12:5390337..5390361 (25 bp)
GCAGATCCAAGAAGCCGTTCGCAAG
LOC_Os12g10190
Target Sequence 
CATACCACAGTTTGGTGCGACCGATTTGAGGAGCACTGTTGAAGCTACTGATCATAACGACTCACCAGACAGGCATGATG
AGAACAAGAACCCAGAAGTCAAGGACGNCATGAACCATGGGAGGAAGTACAGAAGGATCCACCACTCAGGNCCATTGATG
CCGCCAGGAGGGAACGTTGAGGACATGCTCAAGGAGCACGAGAGGCAGATCCAAGAAGCCGTTCGCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49409.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis