Browse Element(s) Details


Os.39074.1.A1_at

Description gb:CB676273
DB_XREF= gi:29679998
DB_XREF=OSJNEe12G21.r
CLONE=OSJNEe12G21
TID=Os.39074.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39074 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_173694.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1020011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10150NANA12+5368912..5369148hypothetical protein
LOC_Os12g10160NANA12+5370262..5371146hypothetical protein
LOC_Os12g10170OsAffx.19584.1.S1_at11/1112+5373910..5374727O-methyltransferase family protein, expressed
LOC_Os12g10180OsAffx.19585.1.S1_at11/1112+5375855..5382028NB-ARC domain containing protein, expressed
LOC_Os12g10190Os.49409.1.S1_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190Os.49409.1.S1_s_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190OsAffx.19586.1.S1_at2/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10200Os.39074.1.A1_at11/1112+5390908..5393891expressed protein
LOC_Os12g10210NANA12+5394889..5395308hypothetical protein
LOC_Os12g10220Os.51603.1.S1_at11/1112+5398038..5400311expressed protein
LOC_Os12g10230OsAffx.7547.1.S1_at11/1112+5400799..5401182hypothetical protein
LOC_Os12g10240OsAffx.31677.1.S1_x_at5/1112+5410785..5411208amino acid carrier, putative
LOC_Os12g10250OsAffx.31678.3.S1_x_at11/1112+5414947..5416660zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39074.1.A1_at--637--2551Chr12:5391681..5391705 (25 bp)
AACTGCGGCCATTTACCAGTCAATG
LOC_Os12g10200
Os.39074.1.A1_at--154--8511Chr12:5391642..5391666 (25 bp)
TGGAACTGTTCCAGCAACCTTTCAG
LOC_Os12g10200
Os.39074.1.A1_at--75--7671Chr12:5391426..5391450 (25 bp)
GGGTTCTGCTACTGTATCATTTAGT
LOC_Os12g10200
Os.39074.1.A1_at--916--6211Chr12:5391294..5391318 (25 bp)
GAGGCGAACCTTAATTTGCTTATGA
LOC_Os12g10200
Os.39074.1.A1_at--714--2551Chr12:5391267..5391291 (25 bp)
AACTGCACATGGTGTCAGACCTTCA
LOC_Os12g10200
Os.39074.1.A1_at--78--451Chr12:5391164..5391188 (25 bp)
ATCTTTAGTCTAACCTTCTGCCAGT
LOC_Os12g10200
Os.39074.1.A1_at--399--10591Chr12:5391149..5391173 (25 bp)
TTCTGCCAGTGTGTCTCAAAGCACT
LOC_Os12g10200
Os.39074.1.A1_at--237--2351Chr12:5391132..5391156 (25 bp)
AAAGCACTACTTACCTGTGACGTTA
LOC_Os12g10200
Os.39074.1.A1_at--303--2531Chr12:5391099..5391123 (25 bp)
AACTTTCTGTTGTCAACGGCTCAAT
LOC_Os12g10200
Os.39074.1.A1_at--532--2831Chr12:5391037..5391061 (25 bp)
AAGTTTGTCGTTCAGTTTCCAGAGG
LOC_Os12g10200
Os.39074.1.A1_at--49--4731Chr12:5391009..5391033 (25 bp)
GCTGGTTTGATGTAACTCTCGCAAT
LOC_Os12g10200
Target Sequence 
AACTGCGGCCATTTACCAGTCAATGTTTGGGCTAGAAGATGGAACTGTTCCAGCAACCTTTCAGGTTATTTATATGACTG
GCTGGAAGGAGCATCCATCACAGCAAAAAGCTAAGAGAAGGGGTTCTGCTACTGTATCATTTAGTGACTTACAAAAACAA
TTTGGTTCCAATCAGAACTAAACTTTATCAAATGGAAAGATGATGCTAGAAAACTCCTGAAGGATGAATAAATCCTCCTA
AGAAAAATTTCTGAGGCGAACCTTAATTTGCTTATGAAGAACTGCACATGGTGTCAGACCTTCAAGAAGTGTTCTCAGTT
TAGTTGTTGCTGCTATCGTCCAAAGGACAAAATTGAAGATTTGCCAGAACCACTGAAACTTCATCTTTAGTCTAACCTTC
TGCCAGTGTGTCTCAAAGCACTACTTACCTGTGACGTTATAGGGCACAACTTTCTGTTGTCAACGGCTCAATGATGTTGA
TCATAGCAAGTTTAGAGAATAAATTCTGTAAGTTTGTCGTTCAGTTTCCAGAGGTATGCTGGTTTGATGTAACTCTCGCA
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39074.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis