Browse Element(s) Details


OsAffx.31678.1.S1_at

Description tigr:9640.m00963
TID=OsAffx.31678.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1026011/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10210NANA12+5394889..5395308hypothetical protein
LOC_Os12g10220Os.51603.1.S1_at11/1112+5398038..5400311expressed protein
LOC_Os12g10230OsAffx.7547.1.S1_at11/1112+5400799..5401182hypothetical protein
LOC_Os12g10240OsAffx.31677.1.S1_x_at5/1112+5410785..5411208amino acid carrier, putative
LOC_Os12g10250OsAffx.31678.3.S1_x_at11/1112+5414947..5416660zinc finger family protein, putative, expressed
LOC_Os12g10260OsAffx.31678.1.S1_at11/1112+5420044..5422532hAT family dimerisation domain containing protein
LOC_Os12g10260OsAffx.31678.3.S1_x_at1/1112+5420044..5422532hAT family dimerisation domain containing protein
LOC_Os12g10270OsAffx.31678.2.S1_at11/1112+5431561..5433649hAT family dimerisation domain containing protein
LOC_Os12g10280OsAffx.7548.1.S1_at11/1112+5434714..5438021Major intrinsic protein, expressed
LOC_Os12g10290NANA12+5439409..5439792hypothetical protein
LOC_Os12g10300NANA12+5441629..5441876retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10310OsAffx.10633.1.S1_at3/1112+5442275..5446785retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31678.1.S1_at--654--5071Chr12:5421505..5421529 (25 bp)
GCAGCCGACTACATCTCTGAGGTAA
LOC_Os12g10260
OsAffx.31678.1.S1_at--693--6151Chr12:5421523..5421547 (25 bp)
GAGGTAACACGAAATATCACTGAGC
LOC_Os12g10260
OsAffx.31678.1.S1_at--1048--10051Chr12:5421576..5421600 (25 bp)
TAGTACCATGAATGCGGTGGCAGTT
LOC_Os12g10260
OsAffx.31678.1.S1_at--674--3691Chr12:5421688..5421712 (25 bp)
CTAGTCCATGATCCAGCACAAGGTT
LOC_Os12g10260
OsAffx.31678.1.S1_at--974--6351Chr12:5421697..5421721 (25 bp)
GATCCAGCACAAGGTTTTGATATTC
LOC_Os12g10260
OsAffx.31678.1.S1_at--176--9651Chr12:5421745..5421769 (25 bp)
TCAGTTCTCTATCCAAGGGTGGCTC
LOC_Os12g10260
OsAffx.31678.1.S1_at--1007--3691Chr12:5421753..5421777 (25 bp)
CTATCCAAGGGTGGCTCAGATGGCG
LOC_Os12g10260
OsAffx.31678.1.S1_at--142--4631Chr12:5421775..5421799 (25 bp)
GCGAGGGACGCTTTGGCAATGCCCA
LOC_Os12g10260
OsAffx.31678.1.S1_at--311--10871Chr12:5421787..5422242 (25 bp)
TTGGCAATGCCCACATGCATACGTG
LOC_Os12g10260
OsAffx.31678.1.S1_at--309--3531Chr12:5421800..5422255 (25 bp)
CATGCATACGTGTTGTCGACGACGA
LOC_Os12g10260
OsAffx.31678.1.S1_at--571--9511Chr12:5422477..5422501 (25 bp)
TCTCGGTGATTTTACCGCCGTCTTC
LOC_Os12g10260
Target Sequence 
GCAGCCGACTACATCTCTGAGGTAACACGAAATATCACTGAGCTATACTCTGACTATGTTGAAGATGATGATAGTACCAT
GAATGCGGTGGCAGTTGGCAGCACTGATCCACTGCAAGAAGCATGGGATGAGCACCGCCGAGCAGAAGCCCAAACAGACC
TCGACCGTTATCTGAAAGATGAGCTAGTCCATGATCCAGCACAAGGTTTTGATATTCTCAGCTGGTGGAAGGTTCACGGG
TCAGTTCTCTATCCAAGGGTGGCTCAGATGGCGAGGGACGCTTTGGCAATGCCCACATGCATACGTGTTGTCGACGACGA
CGACGACGCCATGTGCGCGGCGCTGGTGGCGGAGCTGCGTGAGCTGAGCGAGCGCGTGGCGGACGAGCGGGAGTACGCGC
AGACGGGGCGCGCGTGCGTGCTCGCCGGCATGAGCTCGCACGGGCAGCAGCGCGCCTCGTCGGTGCAGCTCGCCAAGGGG
AGTTCCGTGTACGGGTGTTCGTCCGCGTTCGCGACACCGGAGATGCAGAGGATGGAGAAGCTCTCGGTGATTTTACCGCC
GTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis