Browse Element(s) Details


Os.15231.1.S1_at

Description gb:AF435640.1
DB_XREF= gi:17385960
TID=Os.15231.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glucosyltransferase (OSJNBa0060A14.12), mRNA
DEF=Oryza sativa CSLA2 mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2663011/11glycosyl transferase family 2 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26610Os.5143.1.S1_at11/1110+13538758..13543896expressed protein
LOC_Os10g26620Os.5736.1.S1_s_at11/1110+13551049..13553774Dof domain, zinc finger family protein, expressed
LOC_Os10g26620Os.5736.2.S1_x_at11/1110+13551049..13553774Dof domain, zinc finger family protein, expressed
LOC_Os10g26630Os.15231.1.S1_at11/1110+13564752..13569346glycosyl transferase family 2 protein, putative, expressed
LOC_Os10g26640OsAffx.30547.1.S1_at11/1110+13573666..13575177complex 1 family protein, putative, expressed
LOC_Os10g26640Os.39123.2.S1_s_at11/1110+13573666..13575177complex 1 family protein, putative, expressed
LOC_Os10g26650OsAffx.29757.1.S1_x_at11/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_x_at7/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.4.S1_x_at5/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_at3/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26660Os.20158.1.S1_s_at11/1110+13588501..13594205expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009294biological_processDNA mediated transformation
GO:0009618biological_processresponse to pathogenic bacteria
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15231.1.S1_at--79--9131Chr10:13565457..13565481 (25 bp)
TGCGTGCAGCTCTAAGCGGTTTACT
LOC_Os10g26630
Os.15231.1.S1_at--571--4671Chr10:13565442..13565466 (25 bp)
GCGGTTTACTTGAAACTGCACGTGC
LOC_Os10g26630
Os.15231.1.S1_at--325--8911Chr10:13565372..13565396 (25 bp)
TGAGCTTGATGTCCCACTTCTTGAA
LOC_Os10g26630
Os.15231.1.S1_at--471--8991Chr10:13565351..13565375 (25 bp)
TGAACCACTGAAGCCCACTGAATGT
LOC_Os10g26630
Os.15231.1.S1_at--478--9211Chr10:13565087..13565111 (25 bp)
TCCAAGCTGTTGCATTCACTGTGAT
LOC_Os10g26630
Os.15231.1.S1_at--814--3811Chr10:13565036..13565060 (25 bp)
CTCCTTGTTCGTAGCTTACCATTTA
LOC_Os10g26630
Os.15231.1.S1_at--520--2771Chr10:13564983..13565007 (25 bp)
AAGAGCCAGTATTTTGTGTGCAAGA
LOC_Os10g26630
Os.15231.1.S1_at--99--6031Chr10:13564872..13564896 (25 bp)
GAGATGACTTCTAGAGTTCCAACCT
LOC_Os10g26630
Os.15231.1.S1_at--590--6491Chr10:13564857..13564881 (25 bp)
GTTCCAACCTCCCAGTAGTGGTAGG
LOC_Os10g26630
Os.15231.1.S1_at--214--5871Chr10:13564830..13564854 (25 bp)
GAGCCACCAGCTGTATCTGTTTTAT
LOC_Os10g26630
Os.15231.1.S1_at--257--8151Chr10:13564791..13564815 (25 bp)
GGAAATTACGTCCTGACTAACTAAT
LOC_Os10g26630
Target Sequence 
TGCGTGCAGCTCTAAGCGGTTTACTTGAAACTGCACGTGCAAATGATTGGGTAGTTACTGAAAAAGTAGGTGATCAGGTG
AAGGATGAGCTTGATGTCCCACTTCTTGAACCACTGAAGCCCACTGAATGTGCTGAAAGNATTTACATTCCTGAGCTCTT
GCTTGCNCTCTATCTCCTNATATGTGCATCGTATGNTTTCGTTCTTGGAAATCATAAATACTACATCTACATCTACCTCC
AAGCTGTTGCATTCACTGTGATGGGGTTTGGCTTTGTTGGAACAAGAACTCCTTGTTCGTAGCTTACCATTTACCATTTG
AGATTTTTTTTCTCCTATGACAAGAGCCAGTATTTTGTGTGCAAGAAGGATGATCTGATGATAGGATATACAAAATTGGG
TTAAATGATCTAGGCTAGAGATGTGTATATTTCTAATTGATGCAGAATGGGAGAGATGACTTCTAGAGTTCCAACCTCCC
AGTAGTGGTAGGATGAGCCACCAGCTGTATCTGTTTTATTCAGGCATAATTTGGGAAATTACGTCCTGACTAACTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis