Browse Element(s) Details


OsAffx.30547.1.S1_at

Description tigr:9638.m02275
TID=OsAffx.30547.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Complex 1 protein (LYR family), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2664011/11complex 1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26620Os.5736.1.S1_s_at11/1110+13551049..13553774Dof domain, zinc finger family protein, expressed
LOC_Os10g26620Os.5736.2.S1_x_at11/1110+13551049..13553774Dof domain, zinc finger family protein, expressed
LOC_Os10g26630Os.15231.1.S1_at11/1110+13564752..13569346glycosyl transferase family 2 protein, putative, expressed
LOC_Os10g26640OsAffx.30547.1.S1_at11/1110+13573666..13575177complex 1 family protein, putative, expressed
LOC_Os10g26640Os.39123.2.S1_s_at11/1110+13573666..13575177complex 1 family protein, putative, expressed
LOC_Os10g26650OsAffx.29757.1.S1_x_at11/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_x_at7/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.4.S1_x_at5/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26650OsAffx.29757.3.S1_at3/1110+13581976..13588185Transposable element protein, putative, MuDR
LOC_Os10g26660Os.20158.1.S1_s_at11/1110+13588501..13594205expressed protein
LOC_Os10g26670OsAffx.30548.1.S1_at11/1110+13596953..13598170expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30547.1.S1_at--290--9711Chr10:13573724..13573748 (25 bp)
TCAACATGCCATTACCTGTTAGGCA
LOC_Os10g26640
OsAffx.30547.1.S1_at--194--2511Chr10:13573722..13573746 (25 bp)
AACATGCCATTACCTGTTAGGCAGG
LOC_Os10g26640
OsAffx.30547.1.S1_at--738--591Chr10:13573719..13573743 (25 bp)
ATGCCATTACCTGTTAGGCAGGGCA
LOC_Os10g26640
OsAffx.30547.1.S1_at--883--4431Chr10:13573717..13573741 (25 bp)
GCCATTACCTGTTAGGCAGGGCACC
LOC_Os10g26640
OsAffx.30547.1.S1_at--307--3591Chr10:13573715..13573739 (25 bp)
CATTACCTGTTAGGCAGGGCACCTG
LOC_Os10g26640
OsAffx.30547.1.S1_at--474--10451Chr10:13573713..13573737 (25 bp)
TTACCTGTTAGGCAGGGCACCTGCC
LOC_Os10g26640
OsAffx.30547.1.S1_at--1016--10431Chr10:13573706..13573730 (25 bp)
TTAGGCAGGGCACCTGCCTTTTCAA
LOC_Os10g26640
OsAffx.30547.1.S1_at--391--8271Chr10:13573703..13573727 (25 bp)
GGCAGGGCACCTGCCTTTTCAACAT
LOC_Os10g26640
OsAffx.30547.1.S1_at--278--3471Chr10:13573701..13573725 (25 bp)
CAGGGCACCTGCCTTTTCAACATGC
LOC_Os10g26640
OsAffx.30547.1.S1_at--1155--7591Chr10:13573699..13573723 (25 bp)
GGGCACCTGCCTTTTCAACATGCCA
LOC_Os10g26640
OsAffx.30547.1.S1_at--480--3371Chr10:13573696..13573720 (25 bp)
CACCTGCCTTTTCAACATGCCATTA
LOC_Os10g26640
Target Sequence 
TCAACATGCCATTACCTGTTAGGCAGGGCACCTGCCTTTTCAACATGCCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30547.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis