Browse Element(s) Details


Os.5957.1.S1_at

Description gb:AK069953.1
DB_XREF= gi:32979977
TID=Os.5957.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023037H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037H24, full insert sequence.
FL= gb:AK069953.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1273010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12690Os.46012.2.S1_x_at9/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12690Os.46012.3.S1_x_at6/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12690Os.27088.1.A1_x_at3/117+7246141..7250932retrotransposon protein, putative, unclassified
LOC_Os07g12700NANA7+7254639..7255772expressed protein
LOC_Os07g12710OsAffx.28422.1.S1_at11/117+7256947..7258733GIY-YIG catalytic domain containing protein, expressed
LOC_Os07g12720NANA7+7267190..7267696hypothetical protein
LOC_Os07g12730Os.5957.1.S1_at10/117+7271198..7273025expressed protein
LOC_Os07g12740Os.40360.1.S1_at9/117+7276824..7279565hypothetical protein
LOC_Os07g12740Os.40360.1.S1_x_at8/117+7276824..7279565hypothetical protein
LOC_Os07g12740Os.40855.5.S1_x_at3/117+7276824..7279565hypothetical protein
LOC_Os07g12750NANA7+7288259..7288909hypothetical protein
LOC_Os07g12760OsAffx.16233.1.S1_x_at11/117+7292031..7292345hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5957.1.S1_at--1079--2231NONE
AAATGAACCGTAAGCACACCGCTGC
NONE
Os.5957.1.S1_at--772--1071Chr07:7271666..7271690 (25 bp)
AGGGACGTATTCAGCATCACCGTGT
LOC_Os07g12730
Os.5957.1.S1_at--635--8791Chr07:7271644..7271668 (25 bp)
TGTTCCCGCAAGTCGACTACGTGTT
LOC_Os07g12730
Os.5957.1.S1_at--1097--8311Chr07:7271613..7271637 (25 bp)
GGCTCTTGTTGCGATTCTGGATGAT
LOC_Os07g12730
Os.5957.1.S1_at--1127--6311Chr07:7271566..7271590 (25 bp)
GATGAACTGGAAGCACTCTCATCCC
LOC_Os07g12730
Os.5957.1.S1_at--297--9611Chr07:7271548..7271572 (25 bp)
TCATCCCAAGCACCCTTTTAAATTT
LOC_Os07g12730
Os.5957.1.S1_at--67--491Chr07:7271514..7271538 (25 bp)
ATCTGTCAAATTACCTCTGTTCTAG
LOC_Os07g12730
Os.5957.1.S1_at--808--3871Chr07:7271498..7271522 (25 bp)
CTGTTCTAGGTATTGCTATCTGGTT
LOC_Os07g12730
Os.5957.1.S1_at--1001--8772Chr07:17614523..17614542 (20 bp)
TGTTTATTTTCGCTGGTGTTCCATG
NONE
Os.5957.1.S1_at--706--7411Chr07:7271428..7271452 (25 bp)
GTGTTCCATGATTTGTAATTACCTT
LOC_Os07g12730
Os.5957.1.S1_at--397--6671Chr07:7271342..7271366 (25 bp)
GTTGCAGAGCCAAGTGTTGCTGATC
LOC_Os07g12730
Target Sequence 
AAATGAACCGTAAGCACACCGCTGCAAGTGTGGTGCTGGGGAGGGACGTATTCAGCATCACCGTGTTCCCGCAAGTCGAC
TACGTGTTCATCGCGGCTCTTGTTGCGATTCTGGATGATGTTCACAGGGACAGAAAGGAGTGATGAACTGGAAGCACTCT
CATCCCAAGCACCCTTTTAAATTTCACTTTCATATCTGTCAAATTACCTCTGTTCTAGGTATTGCTATCTGGTTGAGGAT
GTGTGTAAATTTTTCTTTGAATTATGTTTATTTTCGCTGGTGTTCCATGATTTGTAATTACCTTCAAGATTGATCGATGT
TGTATAACTGCTTACAGCAGTGAATGTTTTCTGTTTAAAGATCAGGTTGCAGAGCCAAGTGTTGCTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis