Browse Element(s) Details


Os.5974.1.A1_at

Description gb:AK059359.1
DB_XREF= gi:32969377
TID=Os.5974.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5974 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-D11, full insert sequence.
FL= gb:AK059359.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2943011/11anion transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29404OsAffx.23081.1.S1_at11/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29404Os.54050.1.S1_at10/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29404Os.54050.1.S2_at8/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29420Os.32882.1.A1_a_at11/119+17873475..17879180queuine tRNA-ribosyltransferase, putative, expressed
LOC_Os09g29430OsAffx.30004.1.S1_x_at11/119+17880826..17884640anion transporter family protein, expressed
LOC_Os09g29430Os.5974.1.A1_at11/119+17880826..17884640anion transporter family protein, expressed
LOC_Os09g29440OsAffx.17960.1.S1_at10/119+17891994..17893843hypothetical protein
LOC_Os09g29449NANA9+17897929..17898352NA
LOC_Os09g29460Os.2364.1.S1_at11/119+17902178..17903900Homeobox associated leucine zipper family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0015743biological_processmalate transport
GO:0015367molecular_functionoxoglutarate:malate antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5974.1.A1_at--287--7591Chr09:17884395..17884419 (25 bp)
GGGCTCTATTGATAGCGGCTGCCTG
LOC_Os09g29430
Os.5974.1.A1_at--445--1611Chr09:17884408..17884432 (25 bp)
AGCGGCTGCCTGTAAATTGACCAAA
LOC_Os09g29430
Os.5974.1.A1_at--1063--10471Chr09:17884424..17884448 (25 bp)
TTGACCAAAGTTTTCCATTGGAGCT
LOC_Os09g29430
Os.5974.1.A1_at--80--3831Chr09:17884451..17884475 (25 bp)
CTGAATTCGGAAGGGATGTTTCTTT
LOC_Os09g29430
Os.5974.1.A1_at--1085--8771Chr09:17884467..17884491 (25 bp)
TGTTTCTTTTGTGGCCTGTCGATGA
LOC_Os09g29430
Os.5974.1.A1_at--968--8651Chr09:17884476..17884500 (25 bp)
TGTGGCCTGTCGATGAGAGTTCAAT
LOC_Os09g29430
Os.5974.1.A1_at--884--5231Chr09:17884505..17884529 (25 bp)
GAATAACTTTGTTCCTTCAAAATGA
LOC_Os09g29430
Os.5974.1.A1_at--954--9231Chr09:17884517..17884541 (25 bp)
TCCTTCAAAATGATCAGCTCGGCCG
LOC_Os09g29430
Os.5974.1.A1_at--821--8411Chr09:17884537..17884561 (25 bp)
GGCCGCTCGGTTAGCTCAGCTGTAT
LOC_Os09g29430
Os.5974.1.A1_at--1048--6771Chr09:17884546..17884570 (25 bp)
GTTAGCTCAGCTGTATAGTAAATGT
LOC_Os09g29430
Os.5974.1.A1_at--431--3071Chr09:17884599..17884623 (25 bp)
AATCAGGTCAATCTGATTACCTCAA
LOC_Os09g29430
Target Sequence 
GGGCTCTATTGATAGCGGCTGCCTGTAAATTGACCAAAGTTTTCCATTGGAGCTCACTGAATTCGGAAGGGATGTTTCTT
TTGTGGCCTGTCGATGAGAGTTCAATAACAGAATAACTTTGTTCCTTCAAAATGATCAGCTCGGCCGCTCGGTTAGCTCA
GCTGTATAGTAAATGTAAATTAGGGAACTAAGAGAGTAATGGAAAATCAGGTCAATCTGATTACCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5974.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis