Browse Element(s) Details


Os.6050.1.S1_a_at

Description gb:AK102288.1
DB_XREF= gi:32987497
TID=Os.6050.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6050 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-122-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089K03, full insert sequence.
FL= gb:AK102288.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2980411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g29790Os.52435.1.S1_at10/116+17129112..17133976EXS family protein, expressed
LOC_Os06g29800OsAffx.27869.1.S1_at11/116+17141221..17143445pentatricopeptide, putative, expressed
LOC_Os06g29804Os.6050.1.S1_a_at11/116+17155143..17158846expressed protein
LOC_Os06g29810Os.185.1.S1_a_at11/116+17159337..17163823lectin protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6050.1.S1_a_at--717--6551Chr06:17158259..17158283 (25 bp)
GATTATGTGTTGTACTTGTCGCTGC
LOC_Os06g29804
Os.6050.1.S1_a_at--232--10811Chr06:17158274..17158298 (25 bp)
TTGTCGCTGCTTGATGTGCTCAGTC
LOC_Os06g29804
Os.6050.1.S1_a_at--173--1291Chr06:17158308..17158332 (25 bp)
AGATCCCTCTGGAAGCTTACAGCGA
LOC_Os06g29804
Os.6050.1.S1_a_at--816--10311Chr06:17158448..17158472 (25 bp)
TTTCACTTCTTTTCCGGGATCACGA
LOC_Os06g29804
Os.6050.1.S1_a_at--474--6451Chr06:17158465..17158489 (25 bp)
GATCACGACGATCTGCTGGAAGAGC
LOC_Os06g29804
Os.6050.1.S1_a_at--124--1371Chr06:17158485..17158509 (25 bp)
AGAGCTAGCGAAGTTCAGACCCCTT
LOC_Os06g29804
Os.6050.1.S1_a_at--379--9931Chr06:17158512..17158536 (25 bp)
TACCCCAAGCACAGTTTATAGCCAC
LOC_Os06g29804
Os.6050.1.S1_a_at--305--10191Chr06:17158528..17158552 (25 bp)
TATAGCCACAGCTCAGTCTGGCTGC
LOC_Os06g29804
Os.6050.1.S1_a_at--645--10811Chr06:17158574..17158598 (25 bp)
TTGTCCTAAGCATTCTCCTCAAGTG
LOC_Os06g29804
Os.6050.1.S1_a_at--297--7411Chr06:17158654..17158678 (25 bp)
GTGATATCTCTGTTAAAAGCCAAAG
LOC_Os06g29804
Os.6050.1.S1_a_at--271--6051Chr06:17158712..17158736 (25 bp)
GAGATATCTCCGTGTACTGATGCAA
LOC_Os06g29804
Target Sequence 
GATTATGTGTTGTACTTGTCGCTGCTTGATGTGCTCAGTCGGAATGAGCAGATCCCTCTGGAAGCTTACAGCGAGGTACC
AGAACTAAAAACCCACCCTTTCTCTCATGAGAAATTTCATCATAGATCTGTAGCTTCTTAATCCATCATAAATCACAATC
ACTTTGATCCGTTCTGTTTCGAGTGCAGCTTTCACTTCTTTTCCGGGATCACGACGATCTGCTGGAAGAGCTAGCGAAGT
TCAGACCCCTTCCTACCCCAAGCACAGTTTATAGCCACAGCTCAGTCTGGCTGCTCTTCTTCCTAATGCCCCTCCTTGTC
CTAAGCATTCTCCTCAAGTGCTTCCTTCTTCAACAGCCAGTTGCAAGNTNAAAAAGATCAAGCGTGCAANGTNCATGTGA
TATCTCTGTTAAAAGCCAAAGCGTNTTTGTGGCGATGTCTCGCTGTTTNTATTGGAGATATCTCCGTGTACTGATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6050.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis