Browse Element(s) Details


Os.6118.1.S1_at

Description gb:AK065863.1
DB_XREF= gi:32975881
TID=Os.6118.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043D07, full insert sequence.
FL= gb:AK065863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0570011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05690OsAffx.31606.1.S1_x_at11/1111+2592696..2598360Amino acid permease family protein, expressed
LOC_Os11g05700Os.6118.1.S1_at11/1111+2601649..2610012ABC transporter family protein, expressed
LOC_Os11g05710OsAffx.30832.1.S1_at11/1111+2614264..2616447hypothetical protein
LOC_Os11g05720NANA11+2616909..2619497retrotransposon protein, putative, unclassified
LOC_Os11g05730Os.37931.1.S1_at11/1111+2621575..2622185Histone H3, putative, expressed
LOC_Os11g05740Os.53019.1.S1_at11/1111+2627613..2629467B3 DNA binding domain containing protein, expressed
LOC_Os11g05750OsAffx.7007.1.S1_at11/1111+2633341..2635005hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6118.1.S1_at--669--3091Chr11:2602175..2602199 (25 bp)
AATATGCACTCACATGCTGCAGCAT
LOC_Os11g05700
Os.6118.1.S1_at--151--4771Chr11:2602160..2602184 (25 bp)
GCTGCAGCATCTTGCTAGGAGTTAA
LOC_Os11g05700
Os.6118.1.S1_at--102--6211Chr11:2602133..2602157 (25 bp)
GAGGCAGTCAGAAATCTGTATCCAT
LOC_Os11g05700
Os.6118.1.S1_at--50--491Chr11:2602120..2602144 (25 bp)
ATCTGTATCCATACTCAAGAGGAAT
LOC_Os11g05700
Os.6118.1.S1_at--311--1451Chr11:2602072..2602096 (25 bp)
AGAAGACAGTGCCTCAGCCAGGTAT
LOC_Os11g05700
Os.6118.1.S1_at--1009--4291Chr11:2602061..2602085 (25 bp)
CCTCAGCCAGGTATTGTCGGAAAAT
LOC_Os11g05700
Os.6118.1.S1_at--217--7411Chr11:2602036..2602060 (25 bp)
GTGTTTCGTCATCTAGTTGTTACCT
LOC_Os11g05700
Os.6118.1.S1_at--249--10051Chr11:2602023..2602047 (25 bp)
TAGTTGTTACCTGAAATTTTGAGCA
LOC_Os11g05700
Os.6118.1.S1_at--455--10111Chr11:2601995..2602019 (25 bp)
TATGGTGCAACTTCTGTCCATGGGT
LOC_Os11g05700
Os.6118.1.S1_at--795--2553Chr12:11807626..11807646 (21 bp)
AACTGGAGATTTGTACACTACTTAG
NONE
Os.6118.1.S1_at--1052--4891Chr11:2601738..2601762 (25 bp)
GCTTCAATCTGATGTGTGATCTGTT
LOC_Os11g05700
Target Sequence 
AATATGCACTCACATGCTGCAGCATCTTGCTAGGAGTTAACAGAGGCAGTCAGAAATCTGTATCCATACTCAAGAGGAAT
TTTCATCTATTTGGGGTCTGAAGAGAAGACAGTGCCTCAGCCAGGTATTGTCGGAAAATGTGTTTCGTCATCTAGTTGTT
ACCTGAAATTTTGAGCAATATATGGTGCAACTTCTGTCCATGGGTGTTCTGCAAATGCTTAACAGAGTAAATCCACAAAC
ATTTCCTTGCTGNAGTGATCAGATGTACGAAAGGTTAAATGATGAGATGTTCATCAATTCTGTAAATCATGCGTAGAATC
AGTACTGTGCAACTGGAGATTTGTACACTACTTAGAAAAAAAANTCAATATATGTGATCTTTATTTATTTATTTTTTTGG
CATAGGAACCAAATTTAAAGTGTGCACACACAAAAAATGCTTCAATCTGATGTGTGATCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis