Browse Element(s) Details


OsAffx.31606.1.S1_x_at

Description tigr:9639.m00485
TID=OsAffx.31606.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL162972 amino acid transport-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0606011/11Amino acid permease family protein, expressed
LOC_Os11g0569011/11Amino acid permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06040Os.14919.1.S1_at5/1112+2793026..2800777transposon protein, putative, Mutator sub-class
LOC_Os12g06040Os.56216.1.S1_at1/1112+2793026..2800777transposon protein, putative, Mutator sub-class
LOC_Os12g06040OsAffx.10837.1.S1_at1/1112+2793026..2800777transposon protein, putative, Mutator sub-class
LOC_Os12g06040OsAffx.29313.1.S1_at1/1112+2793026..2800777transposon protein, putative, Mutator sub-class
LOC_Os12g06050OsAffx.19817.1.S1_x_at10/1112+2808554..2809105MATE efflux family protein, putative
LOC_Os12g06060OsAffx.31606.1.S1_x_at11/1112+2815376..2821879Amino acid permease family protein, expressed
LOC_Os12g06070OsAffx.19514.1.S1_at11/1112+2829046..2830938SEC14 cytosolic factor, putative
LOC_Os12g06080OsAffx.19515.1.S1_s_at11/1112+2834309..2836130expressed protein
LOC_Os12g06080Os.5875.1.S1_at11/1112+2834309..2836130expressed protein
LOC_Os12g06090NANA12+2844232..2844941hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0015802biological_processbasic amino acid transport
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015326molecular_functioncationic amino acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31606.1.S1_x_at--1048--4132Chr12:2821329..2821353 (25 bp)
CGCTGGCGCTGTTCACGGAGCTCGA
LOC_Os12g06060
OsAffx.31606.1.S1_x_at--373--5092Chr12:2821380..2821404 (25 bp)
GCACGCTCTTCGTCTTCTACATGGT
LOC_Os12g06060
OsAffx.31606.1.S1_x_at--757--7552Chr12:2821660..2821684 (25 bp)
GGGCGTCCCGGCCATGCCGTGGGTG
LOC_Os12g06060
OsAffx.31606.1.S1_x_at--670--9172Chr12:2821683..2821707 (25 bp)
TGCCCGCGGCGTCGGTGTTCCTCAA
LOC_Os12g06060
OsAffx.31606.1.S1_x_at--660--8372Chr12:2821690..2821714 (25 bp)
GGCGTCGGTGTTCCTCAACGTCTTC
LOC_Os12g06060
OsAffx.31606.1.S1_x_at--918--9232Chr12:2821739..2821763 (25 bp)
TCCTACGTCCGCTTCGGCTTCTTCA
LOC_Os12g06060
OsAffx.31606.1.S1_x_at--1132--4792Chr12:2821777..2821801 (25 bp)
GCTCGTCTACGTGCTCTACAGCGTG
LOC_Os12g06060
OsAffx.31606.1.S1_x_at--250--9412Chr12:2821779..2821803 (25 bp)
TCGTCTACGTGCTCTACAGCGTGCA
LOC_Os12g06060
OsAffx.31606.1.S1_x_at--899--7132Chr12:2821781..2821805 (25 bp)
GTCTACGTGCTCTACAGCGTGCACG
LOC_Os12g06060
OsAffx.31606.1.S1_x_at--641--9092Chr12:2821788..2821812 (25 bp)
TGCTCTACAGCGTGCACGCCAGCTA
LOC_Os12g06060
OsAffx.31606.1.S1_x_at--471--9532Chr12:2821791..2821815 (25 bp)
TCTACAGCGTGCACGCCAGCTACGA
LOC_Os12g06060
Target Sequence 
CGCTGGCGCTGTTCACGGAGCTCGACNTNCTNCTCAACCTCGTCTNCATCGGCACGCTCTTCGTCTTCTACATGGTNGCC
AACGCCGTCGTCTACCGCCGCTACGTCGCCGCCGNCGANGACGACGNNGANNNNCGNCGNCGCGNGGCNNNNNCGACGCT
NGNGTTCCTNGCNGNCCTTCTCNCTNGTGGCGCTCTGCTTCACGCTGNTGTGGNAGNTNGCGCCGNCGNGGCGNGNCCAG
GACGGGGCTNCTNGNGGCGTGCGGCGCGGCNGCCGNNGCNNCNGTCGNNGCGTTCCGGGCGCTGGTGNCGNAGGCGCGGC
GGCCGGAGCTGTGGGGCGTCCCGGCCATGCCGTGGGTGCCCGCGGCGTCGGTGTTCCTCAACGTCTTCCTCCTCGGCTCN
CTCGACCGCCCCTCCTACGTCCGCTTCGGCTTCTTCACCGCCGCCGCCGNGCTCGTCTACGTGCTCTACAGCGTGCACGC
CAGCTACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31606.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis