Browse Element(s) Details


OsAffx.19515.1.S1_s_at

Description tigr:9640.m00528
TID=OsAffx.19515.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DNA-binding protein RAV2, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0608011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06060OsAffx.31606.1.S1_x_at11/1112+2815376..2821879Amino acid permease family protein, expressed
LOC_Os12g06070OsAffx.19514.1.S1_at11/1112+2829046..2830938SEC14 cytosolic factor, putative
LOC_Os12g06080OsAffx.19515.1.S1_s_at11/1112+2834309..2836130expressed protein
LOC_Os12g06080Os.5875.1.S1_at11/1112+2834309..2836130expressed protein
LOC_Os12g06090NANA12+2844232..2844941hypothetical protein
LOC_Os12g06100Os.21415.1.S1_at11/1112+2850829..2855264TLD family protein, expressed
LOC_Os12g06110OsAffx.12125.3.S1_x_at11/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06110OsAffx.12125.3.S1_at11/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06110OsAffx.12125.1.S1_x_at4/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06120OsAffx.31608.1.S1_at10/1112+2858531..2859785expressed protein
LOC_Os12g06120Os.56500.1.S1_at1/1112+2858531..2859785expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19515.1.S1_s_at--1102--3791Chr12:2835417..2835441 (25 bp)
CTGCCAATTCATATGCCTACCATCG
LOC_Os12g06080
OsAffx.19515.1.S1_s_at--1051--251Chr12:2835407..2835431 (25 bp)
ATATGCCTACCATCGCTCCGTAGAC
LOC_Os12g06080
OsAffx.19515.1.S1_s_at--596--531Chr12:2835396..2835420 (25 bp)
ATCGCTCCGTAGACCAAGATCACAG
LOC_Os12g06080
OsAffx.19515.1.S1_s_at--774--4231Chr12:2835390..2835414 (25 bp)
CCGTAGACCAAGATCACAGCGACAT
LOC_Os12g06080
OsAffx.19515.1.S1_s_at--987--5851Chr12:2835385..2835409 (25 bp)
GACCAAGATCACAGCGACATACTAC
LOC_Os12g06080
OsAffx.19515.1.S1_s_at--538--6451Chr12:2835379..2835403 (25 bp)
GATCACAGCGACATACTACACGCAG
LOC_Os12g06080
OsAffx.19515.1.S1_s_at--759--2071Chr12:2835228..2835393 (25 bp)
ACATACTACACGCAGGAGAGTCGCA
LOC_Os12g06080
OsAffx.19515.1.S1_s_at--1125--2011Chr12:2835224..2835389 (25 bp)
ACTACACGCAGGAGAGTCGCAGAGA
LOC_Os12g06080
OsAffx.19515.1.S1_s_at--403--1151Chr12:2835210..2835234 (25 bp)
AGTCGCAGAGAGAAGCAGACGCCAA
LOC_Os12g06080
OsAffx.19515.1.S1_s_at--186--1531Chr12:2835197..2835221 (25 bp)
AGCAGACGCCAAGAGCAGCAGCGCG
LOC_Os12g06080
OsAffx.19515.1.S1_s_at--1140--391Chr12:2835096..2835120 (25 bp)
ATCAGGCGACGGCAATGTACGGCTA
LOC_Os12g06080
Target Sequence 
CTGCCAATTCATATGCCTACCATCGCTCCGTAGACCAAGATCACAGCGACATACTACACGCAGGAGAGTCGCAGAGAGAA
GCAGACGCCAAGAGCAGCAGCGCGGCGTCGGCGCCGCCGCCGTCGAGGCGGCTCAGGCTGTTCGGCGTTAACCTCGACTG
CGGCCCGGAGCCGGAGGCGGATCAGGCGACGGCAATGTACGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19515.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis