Browse Element(s) Details


Os.21415.1.S1_at

Description gb:AK064843.1
DB_XREF= gi:32974861
TID=Os.21415.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.21415 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000G07, full insert sequence.
FL= gb:AK064843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0610011/11TLD family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06070OsAffx.19514.1.S1_at11/1112+2829046..2830938SEC14 cytosolic factor, putative
LOC_Os12g06080OsAffx.19515.1.S1_s_at11/1112+2834309..2836130expressed protein
LOC_Os12g06080Os.5875.1.S1_at11/1112+2834309..2836130expressed protein
LOC_Os12g06090NANA12+2844232..2844941hypothetical protein
LOC_Os12g06100Os.21415.1.S1_at11/1112+2850829..2855264TLD family protein, expressed
LOC_Os12g06110OsAffx.12125.3.S1_x_at11/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06110OsAffx.12125.3.S1_at11/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06110OsAffx.12125.1.S1_x_at4/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06120OsAffx.31608.1.S1_at10/1112+2858531..2859785expressed protein
LOC_Os12g06120Os.56500.1.S1_at1/1112+2858531..2859785expressed protein
LOC_Os12g06130NANA12+2867423..2868868hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21415.1.S1_at--1135--1571Chr12:2851404..2851428 (25 bp)
AGCTCTGACTCCATTCCAAATGGCA
LOC_Os12g06100
Os.21415.1.S1_at--350--3611Chr12:2851381..2851405 (25 bp)
CATTGGCTTTGGAGGGCAGCCGCAT
LOC_Os12g06100
Os.21415.1.S1_at--919--4951Chr12:2851360..2851384 (25 bp)
GCATCACTTCGGTTTTTTCCTATCC
LOC_Os12g06100
Os.21415.1.S1_at--780--6451Chr12:2851326..2851350 (25 bp)
GATCAAGGGCACTCATTTACATGTA
LOC_Os12g06100
Os.21415.1.S1_at--899--10471Chr12:2851310..2851334 (25 bp)
TTACATGTACCACATTCACCAGTCC
LOC_Os12g06100
Os.21415.1.S1_at--217--3431Chr12:2851291..2851315 (25 bp)
CAGTCCTGCCCTTTCAAAGACAAAT
LOC_Os12g06100
Os.21415.1.S1_at--395--8891Chr12:2851082..2851106 (25 bp)
TGAGGACCCTGTACAGCACAATTTT
LOC_Os12g06100
Os.21415.1.S1_at--319--6371Chr12:2851044..2851068 (25 bp)
GATCCTTATATACGATTGTCACTGC
LOC_Os12g06100
Os.21415.1.S1_at--931--10811Chr12:2851029..2851053 (25 bp)
TTGTCACTGCTGAACTGAGCTTTAT
LOC_Os12g06100
Os.21415.1.S1_at--299--1611Chr12:2850993..2851017 (25 bp)
AGCTGCAAGTTGGTCTGTACTGTGT
LOC_Os12g06100
Os.21415.1.S1_at--322--6431Chr12:2850953..2850977 (25 bp)
GATCAACTTCAATGCCGAATTCGAG
LOC_Os12g06100
Target Sequence 
AGCTCTGACTCCATTCCAAATGGCATTGGCTTTGGAGGGCAGCCGCATCACTTCGGTTTTTTCCTATCCGCAAATTTTGA
TCAAGGGCACTCATTTACATGTACCACATTCACCAGTCCTGCCCTTTCAAAGACAAATAGGTTCAGGCCAGAGGTAATTG
AATGTTGGGGCATACAAACGAAGGGGGCACTTGATGAAAAGGCAGAGCTTGTCAAGGGGACAGTCCTAGAGAGATTCAAG
GAGGATCGGAACATGCTGAAGCTGGTTGGTTTGGCGAACGCGAGTGATTGACAGCTGAAAGAGGATCACCANGGCAAATT
CCTGAGGACCCTGTACAGCACAATTTTACAGAAGAAGATAGATCCTTATATACGATTGTCACTGCTGAACTGAGCTTTAT
GAAACTTGTTTAGCTGCAAGTTGGTCTGTACTGTGTGTTGTGGCTGTATTAGATCAACTTCAATGCCGAATTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis