Browse Element(s) Details


Os.5875.1.S1_at

Description gb:AK110593.1
DB_XREF= gi:32995802
TID=Os.5875.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5875 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-168-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-168-F09, full insert sequence.
FL= gb:AK110593.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0608011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06060OsAffx.31606.1.S1_x_at11/1112+2815376..2821879Amino acid permease family protein, expressed
LOC_Os12g06070OsAffx.19514.1.S1_at11/1112+2829046..2830938SEC14 cytosolic factor, putative
LOC_Os12g06080OsAffx.19515.1.S1_s_at11/1112+2834309..2836130expressed protein
LOC_Os12g06080Os.5875.1.S1_at11/1112+2834309..2836130expressed protein
LOC_Os12g06090NANA12+2844232..2844941hypothetical protein
LOC_Os12g06100Os.21415.1.S1_at11/1112+2850829..2855264TLD family protein, expressed
LOC_Os12g06110OsAffx.12125.3.S1_x_at11/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06110OsAffx.12125.3.S1_at11/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06110OsAffx.12125.1.S1_x_at4/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06120OsAffx.31608.1.S1_at10/1112+2858531..2859785expressed protein
LOC_Os12g06120Os.56500.1.S1_at1/1112+2858531..2859785expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5875.1.S1_at--1006--6171Chr12:2834830..2834854 (25 bp)
GAGGAGATCTGAGGCCTTTGCTTGC
LOC_Os12g06080
Os.5875.1.S1_at--373--10271Chr12:2834814..2834838 (25 bp)
TTTGCTTGCAGAATCCTAACCACCA
LOC_Os12g06080
Os.5875.1.S1_at--898--5031Chr12:2834807..2834831 (25 bp)
GCAGAATCCTAACCACCAACAGTGA
LOC_Os12g06080
Os.5875.1.S1_at--222--1631Chr12:2834788..2834812 (25 bp)
CAGTGAAACTAGTTACTACTACCAC
LOC_Os12g06080
Os.5875.1.S1_at--1125--9891Chr12:2834752..2834776 (25 bp)
TACTACACTCTGAACCAAGTGACAG
LOC_Os12g06080
Os.5875.1.S1_at--864--1691Chr12:2834739..2834763 (25 bp)
ACCAAGTGACAGGTTCGATTGAATT
LOC_Os12g06080
Os.5875.1.S1_at--426--6711Chr12:2834727..2834751 (25 bp)
GTTCGATTGAATTGACCTGTTGGAA
LOC_Os12g06080
Os.5875.1.S1_at--267--371Chr12:2834636..2834660 (25 bp)
ATCAGAGTGCCCCTTTTCCTGGGTT
LOC_Os12g06080
Os.5875.1.S1_at--117--6931Chr12:2834436..2834460 (25 bp)
GTATGTATGTGTCATCTGTAGTATG
LOC_Os12g06080
Os.5875.1.S1_at--276--8691Chr12:2834413..2834437 (25 bp)
TGTGACTGTGAGTGGGTCCATGAAC
LOC_Os12g06080
Os.5875.1.S1_at--1160--2811Chr12:2834380..2834404 (25 bp)
AAGTTGATGTATCCTTCTCCTGCTG
LOC_Os12g06080
Target Sequence 
GAGGAGATCTGAGGCCTTTGCTTGCAGAATCCTAACCACCAACAGTGAAACTAGTTACTACTACCACCAGCCTACTACTA
CTACACTCTGAACCAAGTGACAGGTTCGATTGAATTGACCTGTTGGAAGGGAAAAAAGAAGAAGGAAGTGGGGGGAGATC
CCTTGTTTCCCGGGCAATCTTCCTTCCATGAATCATCAGAGTGCCCCTTTTCCTGGGTTTTTTTTACATTCTTGTNTTCC
AGAAACCCTACTTACAGTACGGGGGCCCTTGCAGCAGGTGGGGAGGTTTCAGGAAACATCAGGTTGAAAAGGAGAGGGAG
GAGAGAGATGGTGACACNCCATGAGAANCNAACAGGAGAGAGAGAGAGAGAGGAAAAATTGACATGTTTTGCAAGTATGT
ATGTGTCATCTGTAGTATGTGACTGTGAGTGGGTCCATGAACAANCTGTGAAGTTGATGTATCCTTCTCCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis