Browse Element(s) Details


OsAffx.7007.1.S1_at

Description tigr:9639.m00493
TID=OsAffx.7007.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0575011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05700Os.6118.1.S1_at11/1111+2601649..2610012ABC transporter family protein, expressed
LOC_Os11g05710OsAffx.30832.1.S1_at11/1111+2614264..2616447hypothetical protein
LOC_Os11g05720NANA11+2616909..2619497retrotransposon protein, putative, unclassified
LOC_Os11g05730Os.37931.1.S1_at11/1111+2621575..2622185Histone H3, putative, expressed
LOC_Os11g05740Os.53019.1.S1_at11/1111+2627613..2629467B3 DNA binding domain containing protein, expressed
LOC_Os11g05750OsAffx.7007.1.S1_at11/1111+2633341..2635005hypothetical protein
LOC_Os11g05760Os.53800.1.S1_at11/1111+2636539..2642204Serine carboxypeptidase S28 family protein, expressed
LOC_Os11g05760Os.53962.1.S1_at1/1111+2636539..2642204Serine carboxypeptidase S28 family protein, expressed
LOC_Os11g05770Os.54938.1.S1_at11/1111+2654947..2656312uncharacterized plant-specific domain TIGR01568 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7007.1.S1_at--840--9031Chr11:2633802..2633826 (25 bp)
TGCAGAACTGCAGATGACATCCGTA
LOC_Os11g05750
OsAffx.7007.1.S1_at--408--5671Chr11:2633817..2633841 (25 bp)
GACATCCGTATTGCTGACTGTACTG
LOC_Os11g05750
OsAffx.7007.1.S1_at--439--4751Chr11:2633829..2633853 (25 bp)
GCTGACTGTACTGTAGCAGCAGGAG
LOC_Os11g05750
OsAffx.7007.1.S1_at--865--1311Chr11:2633855..2633879 (25 bp)
AGATGGGTGCCAGCCTTGGAGAATC
LOC_Os11g05750
OsAffx.7007.1.S1_at--1060--4311Chr11:2633868..2633892 (25 bp)
CCTTGGAGAATCCTGCAGGTGAAAG
LOC_Os11g05750
OsAffx.7007.1.S1_at--126--91Chr11:2634234..2634258 (25 bp)
ATTGCCAATGGCAGTGCACGCCACA
LOC_Os11g05750
OsAffx.7007.1.S1_at--108--1131Chr11:2634246..2634270 (25 bp)
AGTGCACGCCACACACAAGCATCAG
LOC_Os11g05750
OsAffx.7007.1.S1_at--815--1491Chr11:2634313..2634337 (25 bp)
AGCAAACATCCACAGCAGCTGGCTC
LOC_Os11g05750
OsAffx.7007.1.S1_at--588--1591Chr11:2634380..2634404 (25 bp)
AGCTCGTTTCCTCGTCGCGTGCATG
LOC_Os11g05750
OsAffx.7007.1.S1_at--747--7231Chr11:2634393..2634417 (25 bp)
GTCGCGTGCATGCACAATTGCATAG
LOC_Os11g05750
OsAffx.7007.1.S1_at--217--3171Chr11:2634408..2634432 (25 bp)
AATTGCATAGAGTATGCAGCTGCAG
LOC_Os11g05750
Target Sequence 
TGCAGAACTGCAGATGACATCCGTATTGCTGACTGTACTGTAGCAGCAGGAGGAGATGGGTGCCAGCCTTGGAGAATCCT
GCAGGTGAAAGAGGCTGATGAGCAGGTGAAAGTGAAACGTGAGGCAGGTGCCATTGCCAATGGCAGTGCACGCCACACAC
AAGCATCAGCATCAGCAAATTCAGCAGCAACAACCAACCAGCAACGCACGCAGCAAACATCCACAGCAGCTGGCTCCTCC
TTCCCCCACTCCAACAGTTTGGCAGCAGCAGCAGCGGCAGCTCGTTTCCTCGTCGCGTGCATGCACAATTGCATAGAGTA
TGCAGCTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis