Browse Element(s) Details


Os.53800.1.S1_at

Description gb:AK100124.1
DB_XREF= gi:32985333
TID=Os.53800.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007P07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007P07, full insert sequence.
FL= gb:AK100124.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0576011/11Serine carboxypeptidase S28 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05710OsAffx.30832.1.S1_at11/1111+2614264..2616447hypothetical protein
LOC_Os11g05720NANA11+2616909..2619497retrotransposon protein, putative, unclassified
LOC_Os11g05730Os.37931.1.S1_at11/1111+2621575..2622185Histone H3, putative, expressed
LOC_Os11g05740Os.53019.1.S1_at11/1111+2627613..2629467B3 DNA binding domain containing protein, expressed
LOC_Os11g05750OsAffx.7007.1.S1_at11/1111+2633341..2635005hypothetical protein
LOC_Os11g05760Os.53800.1.S1_at11/1111+2636539..2642204Serine carboxypeptidase S28 family protein, expressed
LOC_Os11g05760Os.53962.1.S1_at1/1111+2636539..2642204Serine carboxypeptidase S28 family protein, expressed
LOC_Os11g05770Os.54938.1.S1_at11/1111+2654947..2656312uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os11g05780OsAffx.19517.2.S1_at11/1111+2661590..2662318uncharacterized plant-specific domain TIGR01568 family protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005764cellular_componentlysosome
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0008233molecular_functionpeptidase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53800.1.S1_at--608--2051Chr11:2637249..2637369 (25 bp)
ACTTCGGCGGCTACGATATTCGGAA
LOC_Os11g05760
Os.53800.1.S1_at--491--6411Chr11:2637213..2637237 (25 bp)
GATCTGGGAGTAACATCATCTTCTT
LOC_Os11g05760
Os.53800.1.S1_at--105--431Chr11:2637199..2637223 (25 bp)
ATCATCTTCTTCAATGGACTCCGCG
LOC_Os11g05760
Os.53800.1.S1_at--433--2971Chr11:2637187..2637211 (25 bp)
AATGGACTCCGCGATCCGTGGAGCG
LOC_Os11g05760
Os.53800.1.S1_at--355--4171Chr11:2637067..2637188 (25 bp)
CGCCGGCGGAATACTGAAGAGCATT
LOC_Os11g05760
Os.53800.1.S1_at--580--5351Chr11:2637052..2637076 (25 bp)
GAAGAGCATTTCCAACAGCATCATT
LOC_Os11g05760
Os.53800.1.S1_at--327--9591Chr11:2637032..2637056 (25 bp)
TCATTGCGCTGGTTGAGCCAAAAGG
LOC_Os11g05760
Os.53800.1.S1_at--292--7531Chr11:2636865..2636889 (25 bp)
GTGGACACCACGTAGACCTGAGATT
LOC_Os11g05760
Os.53800.1.S1_at--577--1371Chr11:2636852..2636876 (25 bp)
AGACCTGAGATTCTCCACCAAGGAA
LOC_Os11g05760
Os.53800.1.S1_at--529--2531Chr11:2636728..2636752 (25 bp)
AACTAGTCTTAGCTGTTCTCCACAA
LOC_Os11g05760
Os.53800.1.S1_at--702--1191Chr11:2636668..2636692 (25 bp)
AGTAGTCTCACTATATGTGCATGAC
LOC_Os11g05760
Target Sequence 
ACTTCGGCGGCTACGATATTCGGAATGTTTTGAAGAGATCTGGGAGTAACATCATCTTCTTCAATGGACTCCGCGATCCG
TGGAGCGCCGGCGGAATACTGAAGAGCATTTCCAACAGCATCATTGCGCTGGTTGAGCCAAAAGGTGGACACCACGTAGA
CCTGAGATTCTCCACCAAGGAAGACCCTGAATGGCTCAAGAAAGTCCGGAGACAGGAGATGAGAATCATAGCTGATTGGC
TCAAACAATACTACAGTGATGAGGCCATAGATAGCATGATGAACTAGTCTTAGCTGTTCTCCACAAAAAAAAAAAAAACA
CTAGTCTCAGCTAGTATTATAAAGTAGTCTCACTATATGTGCATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53800.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis