Browse Element(s) Details


Os.6125.1.S1_at

Description gb:AK069583.1
DB_XREF= gi:32979607
TID=Os.6125.1
CNT=46
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.6125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022B19, full insert sequence.
FL= gb:AK104893.1 gb:AK069583.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2919011/11PDI, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29170Os.26754.1.S1_at11/113+16526730..16532581NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os03g29180Os.12950.1.S1_at10/113+16534924..16540918LOC496049 protein, putative, expressed
LOC_Os03g29190Os.6125.1.S1_at11/113+16544957..16550702PDI, putative, expressed
LOC_Os03g29194NANA3+16554364..16556631hypothetical protein
LOC_Os03g29200OsAffx.30389.1.S1_x_at4/113+16558208..16558882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g29206OsAffx.10633.1.S1_at7/113+16560431..16561503retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g29212NANA3+16561969..16565106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g29220NANA3+16569718..16571769retrotransposon protein, putative, LINE subclass
LOC_Os03g29222NANA3+16573418..16575700retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6125.1.S1_at--1150--5391Chr03:16550175..16550199 (25 bp)
GAAGCTGAAGCACGAGCTGCACGAT
LOC_Os03g29190
Os.6125.1.S1_at--103--1871Chr03:16550186..16550210 (25 bp)
ACGAGCTGCACGATGAGCATGAGCT
LOC_Os03g29190
Os.6125.1.S1_at--666--1071Chr03:16550284..16550308 (25 bp)
AGGGAGTGTGACTTCGACCTGCACC
LOC_Os03g29190
Os.6125.1.S1_at--775--911Chr03:16550360..16550384 (25 bp)
AGGCTGAGGCTGACCCAGCATGCGA
LOC_Os03g29190
Os.6125.1.S1_at--627--6211Chr03:16550387..16550411 (25 bp)
GAGGCGTTTGCAGGAAGGCCTAAAA
LOC_Os03g29190
Os.6125.1.S1_at--968--2771Chr03:16550410..16550434 (25 bp)
AAGAGACTTGTTCTTCCACTGGTTA
LOC_Os03g29190
Os.6125.1.S1_at--874--9571Chr03:16550421..16550445 (25 bp)
TCTTCCACTGGTTATCTACTGCTGA
LOC_Os03g29190
Os.6125.1.S1_at--677--9911Chr03:16550437..16550461 (25 bp)
TACTGCTGATTTAAGCGTGCCTGGA
LOC_Os03g29190
Os.6125.1.S1_at--249--4011Chr03:16550452..16550476 (25 bp)
CGTGCCTGGATGTTTGGATGTGAAA
LOC_Os03g29190
Os.6125.1.S1_at--986--5471Chr03:16550565..16550589 (25 bp)
GAACATTAGTTGAGACCAGAGCTTT
LOC_Os03g29190
Os.6125.1.S1_at--1035--7331Chr03:16550607..16550631 (25 bp)
GTGCAAACCAAAACCATATGTAAGT
LOC_Os03g29190
Target Sequence 
GAAGCTGAAGCACGAGCTGCACGATGAGCATGAGCTCGTGCTGACTCGCTGCACCACGTATGGCTGTGATGGATGCGACG
AGATGGGCAGCTCGTGGTCGTACAGGTGCAGGGAGTGTGACTTCGACCTGCACCCCAAGTGCGCGCTGGGGAAGGAGGAG
GAGAAGAAGGGCGATGACGAGGCTGAGGCTGAGGCTGACCCAGCATGCGAGGGAGGCGTTTGCAGGAAGGCCTAAAAGAG
ACTTGTTCTTCCACTGGTTATCTACTGCTGATTTAAGCGTGCCTGGATGTTTGGATGTGAAATTAGAGAATTATGTAGTG
ANTAATAAATATGGTTTTGTTTACAAAGTAGTGGTATTNGGGTTGCTGGTACATTGGTATTTGTGTTGATGAACATTAGT
TGAGACCAGAGCTTTGGATTATTCATTATTATGTGCAAACCAAAACCATATGTAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis