Browse Element(s) Details


OsAffx.30389.1.S1_x_at

Description tigr:9638.m01032
TID=OsAffx.30389.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g292004/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g230902/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29180Os.12950.1.S1_at10/113+16534924..16540918LOC496049 protein, putative, expressed
LOC_Os03g29190Os.6125.1.S1_at11/113+16544957..16550702PDI, putative, expressed
LOC_Os03g29194NANA3+16554364..16556631hypothetical protein
LOC_Os03g29200OsAffx.30389.1.S1_x_at4/113+16558208..16558882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g29206OsAffx.10633.1.S1_at7/113+16560431..16561503retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g29212NANA3+16561969..16565106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g29220NANA3+16569718..16571769retrotransposon protein, putative, LINE subclass
LOC_Os03g29222NANA3+16573418..16575700retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29224NANA3+16576343..16578548retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29230NANA3+16579344..16579685retrotransposon protein, putative, unclassified
LOC_Os03g29240Os.6150.1.S1_s_at11/113+16583311..16586842PDI, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30389.1.S1_x_at--599--3931Chr10:6139071..6139095 (25 bp)
CGGCGAGCCATGAGATCTTCCCTTG
NONE
OsAffx.30389.1.S1_x_at--977--8371Chr10:6139072..6139096 (25 bp)
GGCGAGCCATGAGATCTTCCCTTGG
NONE
OsAffx.30389.1.S1_x_at--414--4611Chr10:6139073..6139097 (25 bp)
GCGAGCCATGAGATCTTCCCTTGGA
NONE
OsAffx.30389.1.S1_x_at--136--6431Chr10:6139084..6139108 (25 bp)
GATCTTCCCTTGGAGATGGAGTCGC
NONE
OsAffx.30389.1.S1_x_at--900--431Chr10:6139085..6139109 (25 bp)
ATCTTCCCTTGGAGATGGAGTCGCT
NONE
OsAffx.30389.1.S1_x_at--132--4337Chr10:6139091..6139115 (25 bp)
CCTTGGAGATGGAGTCGCTGCCGCC
NONE
OsAffx.30389.1.S1_x_at--175--4393Chr10:6139185..6139209 (25 bp)
GCCACTGGGGTCTGGCCGGACCGGT
NONE
OsAffx.30389.1.S1_x_at--1002--1919Chr12:14410650..14410672 (23 bp)
ACGGGAGCCGCCCTTCTTCAATCCG
NONE
OsAffx.30389.1.S1_x_at--104--4198Chr12:14410657..14410681 (25 bp)
GCCCTTCTTCAATCCGTCCTCGTCT
NONE
OsAffx.30389.1.S1_x_at--356--9411Chr10:6139253..6139277 (25 bp)
TCGTCTCGTCGTCACGCCGGTGAAG
NONE
OsAffx.30389.1.S1_x_at--1092--7151Chr10:6139255..6139279 (25 bp)
GTCTCGTCGTCACGCCGGTGAAGCC
NONE
Target Sequence 
CGGCGAGCCATGAGATCTTCCCTTGGAGATGGAGTCGCTGCCGCCACCATCAACCGCTCCTCCACCACCTCCACCGACAC
CAAGCCGACGCCGACGCCGTTCCTCCACTCCCGCGCCACTGGGGTCTGGCCGGACCGGTACCCTGGCTGCGCGCACGGGA
GCCGCCCTTCTTCAATCCGTCCTCGTCTCGTCGTCACGCCGGTGAAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30389.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis