Browse Element(s) Details


Os.6150.1.S1_s_at

Description gb:CF322516
DB_XREF= gi:33793271
DB_XREF=HDN--01-E15.g1
CLONE=HDN--01-E15
TID=Os.6150.1
CNT=22
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6150 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564756.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2924011/11PDI, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29200OsAffx.30389.1.S1_x_at4/113+16558208..16558882retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g29206OsAffx.10633.1.S1_at7/113+16560431..16561503retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g29212NANA3+16561969..16565106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g29220NANA3+16569718..16571769retrotransposon protein, putative, LINE subclass
LOC_Os03g29222NANA3+16573418..16575700retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29224NANA3+16576343..16578548retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29230NANA3+16579344..16579685retrotransposon protein, putative, unclassified
LOC_Os03g29240Os.6150.1.S1_s_at11/113+16583311..16586842PDI, putative, expressed
LOC_Os03g29244OsAffx.3360.1.S1_at11/113+16589202..16589525hypothetical protein
LOC_Os03g29250OsAffx.13105.1.S1_at11/113+16600081..16600913SPX domain-containing protein, putative, expressed
LOC_Os03g29250Os.51747.1.S1_x_at1/113+16600081..16600913SPX domain-containing protein, putative, expressed
LOC_Os03g29260Os.183.1.S1_at9/113+16609096..16613259EF-1 guanine nucleotide exchange domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6150.1.S1_s_at--648--3271Chr03:16586202..16586226 (25 bp)
CAAAGATGCGAAGACCCCACTGGTG
LOC_Os03g29240
Os.6150.1.S1_s_at--43--1851Chr03:16586240..16586264 (25 bp)
ACGCTTTTCCATTCACCGAGGAGAA
LOC_Os03g29240
Os.6150.1.S1_s_at--1048--5391Chr03:16586328..16586352 (25 bp)
GAAGCTAAAGCATGATCTGCACGAT
LOC_Os03g29240
Os.6150.1.S1_s_at--234--1891Chr03:16586348..16586372 (25 bp)
ACGATCATGAGCTTGTGCTGACTCG
LOC_Os03g29240
Os.6150.1.S1_s_at--635--1871Chr03:16586402..16586426 (25 bp)
ACGAGATGGGCGACTCATGGTCCTA
LOC_Os03g29240
Os.6150.1.S1_s_at--226--5711Chr03:16586413..16586437 (25 bp)
GACTCATGGTCCTACAGGTGCAAGG
LOC_Os03g29240
Os.6150.1.S1_s_at--237--5291Chr03:16586437..16586461 (25 bp)
GAATGTGACTTCGATCTGCATCCCA
LOC_Os03g29240
Os.6150.1.S1_s_at--368--8771Chr03:16586577..16586601 (25 bp)
TGTTTCCCCTGGCTTCTTTTTATCT
LOC_Os03g29240
Os.6150.1.S1_s_at--804--3671Chr03:16586592..16586616 (25 bp)
CTTTTTATCTCTGTGCCGGTTGAAT
LOC_Os03g29240
Os.6150.1.S1_s_at--614--4251Chr03:16586607..16586631 (25 bp)
CCGGTTGAATCGTGCCTGAATGTTT
LOC_Os03g29240
Os.6150.1.S1_s_at--338--3051Chr03:16586667..16586691 (25 bp)
AATCGTCTCCTGGTTTTGCTTATAA
LOC_Os03g29240
Target Sequence 
CAAAGATGCGAAGACCCCACTGGTGGCCCATGGCGCCGACGCTTTTCCATTCACCGAGGAGAAGCTTCAGGAGCTGGAGA
AGGAGAAGGAGAAGAAGATCAATGACATGGCAAAGGGGTGGCCTGAGAAGCTAAAGCATGATCTGCACGATCATGAGCTT
GTGCTGACTCGCTGCACCACGTATGGCTGCGATGGATGCGACGAGATGGGCGACTCATGGTCCTACAGGTGCAAGGAATG
TGACTTCGATCTGCATCCCAAGTGCGCGCTGGAGGAGAAGGGCGATGTGGAGATGGGAGAGGAGAATGCTGAGGCTGCCC
CCGCTGGGTATGTGTGCGAGGGAGACGTCTGCAGAAAGGTCTAAAGGAGTTGTTTTGTTTCCCCTGGCTTCTTTTTATCT
CTGTGCCGGTTGAATCGTGCCTGAATGTTTGGGATGTGAATCCTATGTGATGAGTATAATAAAACAATCGTCTCCTGGTT
TTGCTTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6150.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis