Browse Element(s) Details


Os.183.1.S1_at

Description gb:L36094.1
DB_XREF= gi:535743
TID=Os.183.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.183 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for elongation factor 1 beta 2, complete cds
DEF=Oryza sativa unknown ORF mRNA, complete cds.
FL= gb:AK059914.1 gb:L36094.1 gb:D83727.1 gb:AK073405.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g292609/11EF-1 guanine nucleotide exchange domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29240Os.6150.1.S1_s_at11/113+16583311..16586842PDI, putative, expressed
LOC_Os03g29244OsAffx.3360.1.S1_at11/113+16589202..16589525hypothetical protein
LOC_Os03g29250OsAffx.13105.1.S1_at11/113+16600081..16600913SPX domain-containing protein, putative, expressed
LOC_Os03g29250Os.51747.1.S1_x_at1/113+16600081..16600913SPX domain-containing protein, putative, expressed
LOC_Os03g29260Os.183.1.S1_at9/113+16609096..16613259EF-1 guanine nucleotide exchange domain containing protein, expressed
LOC_Os03g29270OsAffx.13106.1.S1_at11/113+16615429..16617649hypothetical protein
LOC_Os03g29280NANA3+16626480..16627093hypothetical protein
LOC_Os03g29284NANA3+16627451..16628680NA
LOC_Os03g29290OsAffx.10637.3.S1_s_at10/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29290OsAffx.10637.1.S1_s_at9/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29290OsAffx.10637.4.S1_s_at7/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29290OsAffx.10637.2.S1_at2/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29310OsAffx.32056.1.S1_x_at5/113+16636629..16639651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29310OsAffx.32056.1.S1_at3/113+16636629..16639651transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006414biological_processtranslational elongation
GO:0005853cellular_componenteukaryotic translation elongation factor 1 complex
GO:0003746molecular_functiontranslation elongation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.183.1.S1_at--184--8711Chr03:16610395..16610418 (24 bp)
TGTCTCCAACTGCTGACCAAAAGGC
LOC_Os03g29260
Os.183.1.S1_at--720--5451Chr03:16610719..16610743 (25 bp)
GAACGGGCCGCAGCTGTCAAGGCTT
LOC_Os03g29260
Os.183.1.S1_at--377--491NONE
ATCTGGGAAATCATCGGTTCTGCTA
NONE
Os.183.1.S1_at--284--7711NONE
GGGTGCATCCAAACTTTGTACCAGT
NONE
Os.183.1.S1_at--408--9591Chr03:16611707..16611731 (25 bp)
TCTTGTTTCTGTGGACAGTCTCATT
LOC_Os03g29260
Os.183.1.S1_at--136--7931Chr03:16611734..16611758 (25 bp)
GGATTATTTTTACACGGAACCAGCT
LOC_Os03g29260
Os.183.1.S1_at--395--3431Chr03:16611771..16611795 (25 bp)
CAGAGTTGTGACATTGTTGCTTTCA
LOC_Os03g29260
Os.183.1.S1_at--656--8031Chr03:16612693..16612717 (25 bp)
GGAGTCTTGTCAGAGGCAGCCTTAC
LOC_Os03g29260
Os.183.1.S1_at--1109--931Chr03:16612724..16612748 (25 bp)
AGGAATGCTATATGCTCATCATCAG
LOC_Os03g29260
Os.183.1.S1_at--1099--9291Chr03:16612753..16612777 (25 bp)
TCCCAATGGTTTATGTTTCGTCTAT
LOC_Os03g29260
Os.183.1.S1_at--12--5851Chr03:16612779..16612803 (25 bp)
GACCTTGAGTGTACTGCGAACCAGC
LOC_Os03g29260
Target Sequence 
TGTCTCCAACTGCTGACCAAAAGGCACCAGCAGCTGATGAAGAAGATGATGACGATGTTGATCTGTTTGGTGAGGAGACT
GAAGAGGAGAAGAAAGCAGCAGAAGAACGGGCCGCAGCTGTCAAGGCTTCTGGAAAGAAGAAAGAATCTGGGAAATCATC
GGTTCTGCTAGATGTAAAGCCATGGGATGACGGAAACAGACATGGCAAAGCTTGGAGGAAGCTGTNGAGGAATGTTGAAG
ATGGAGGGCCTGCTCTGGGGTGCATCCAAACTTTGTACCAGTTGGATTATGGCATCAAGAAGTTGCAAATTATGATGACC
ATTGTGGACGATCTTGTTTCTGTGGACAGTCTCATTGAGGATTATTTTTACACGGAACCAGCTAATGAGTTTATTCAGAG
TTGTGACATTGTTGCTTTCAACAAAATCTAAAATGGAGTCTTGTCAGAGGCAGCCTTACTAAAAGAGGAATGCTATATGC
TCATCATCAGAATTTCCCAATGGTTTATGTTTCGTCTATGGACCTTGAGTGTACTGCGAACCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis