Browse Element(s) Details


OsAffx.13106.1.S1_at

Description tigr:9631.m02853
TID=OsAffx.13106.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2927011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29250OsAffx.13105.1.S1_at11/113+16600081..16600913SPX domain-containing protein, putative, expressed
LOC_Os03g29250Os.51747.1.S1_x_at1/113+16600081..16600913SPX domain-containing protein, putative, expressed
LOC_Os03g29260Os.183.1.S1_at9/113+16609096..16613259EF-1 guanine nucleotide exchange domain containing protein, expressed
LOC_Os03g29270OsAffx.13106.1.S1_at11/113+16615429..16617649hypothetical protein
LOC_Os03g29280NANA3+16626480..16627093hypothetical protein
LOC_Os03g29284NANA3+16627451..16628680NA
LOC_Os03g29290OsAffx.10637.3.S1_s_at10/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29290OsAffx.10637.1.S1_s_at9/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29290OsAffx.10637.4.S1_s_at7/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29290OsAffx.10637.2.S1_at2/113+16631052..16634706transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29310OsAffx.32056.1.S1_x_at5/113+16636629..16639651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29310OsAffx.32056.1.S1_at3/113+16636629..16639651transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13106.1.S1_at--800--2731Chr03:16616806..16616830 (25 bp)
AAGAAGTATTCCGAGGCCGTCGCCA
LOC_Os03g29270
OsAffx.13106.1.S1_at--770--8131Chr03:16616687..16616711 (25 bp)
GGACAGGAGAGCACAGCGCGATCAC
LOC_Os03g29270
OsAffx.13106.1.S1_at--688--9491Chr03:16616637..16616661 (25 bp)
TCTCGCCGGGCACCAAGATGATACT
LOC_Os03g29270
OsAffx.13106.1.S1_at--212--1311Chr03:16616622..16616646 (25 bp)
AGATGATACTCACCAAGGCCAAGGA
LOC_Os03g29270
OsAffx.13106.1.S1_at--287--2931Chr03:16616602..16616626 (25 bp)
AAGGACATTCTCGTCGACGGCAACA
LOC_Os03g29270
OsAffx.13106.1.S1_at--829--2451Chr03:16616542..16616566 (25 bp)
AACAAGTCATTCAAGTTCCTTCTCA
LOC_Os03g29270
OsAffx.13106.1.S1_at--284--8271Chr03:16616483..16616507 (25 bp)
GGCTCCGAGCTTGAAGGACCCGACG
LOC_Os03g29270
OsAffx.13106.1.S1_at--225--951Chr03:16616469..16616493 (25 bp)
AGGACCCGACGGAATCATCAATGGA
LOC_Os03g29270
OsAffx.13106.1.S1_at--507--8351Chr03:16615673..16615697 (25 bp)
GGCGTCGAGGACATACTTCTTGGAG
LOC_Os03g29270
OsAffx.13106.1.S1_at--790--811Chr03:16615635..16615659 (25 bp)
ATGGTGATGACCATCGCCTTTGTCG
LOC_Os03g29270
OsAffx.13106.1.S1_at--1116--7191Chr03:16615605..16615629 (25 bp)
GTCGTCCTCGTTGCGGCGAAGAAGA
LOC_Os03g29270
Target Sequence 
AAGAAGTATTCCGAGGCCGTCGCCACCGCCGCCGCCACCGCCACCTGCTGCGGCGGCGGCGGCGCGGACAGTGGCCTGCC
GCTCGACATGTTCCTCAACTGCCCTTCCAGCCTCGAGGTGGACAGGAGAGCACAGCGCGATCACGGCGGCGGAGGCGCCG
CCGTCGGCCTCTCGCCGGGCACCAAGATGATACTCACCAAGGCCAAGGACATTCTCGTCGACGGCAACACCAGAAACACC
ACCACCAGCGGCGGCGACATCAAGAACAAGTCATTCAAGTTCCTTCTCAAGAAGATGTTCGTCTGCCATGGCGGCTTCGC
GCCGGCTCCGAGCTTGAAGGACCCGACGGAATCATCAATGGAGAAGTTTCTCCGAACGGTGCTCGGCAAGAAGATCGCTG
CCCGGCCGAGCAATTCACCGGCGTCGAGGACATACTTCTTGGAGGGTAACAATGCACATGGTGATGACCATCGCCTTTGT
CGCCGCCGTCGTCCTCGTTGCGGCGAAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis