Browse Element(s) Details


OsAffx.13105.1.S1_at

Description tigr:9631.m02851
TID=OsAffx.13105.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative SPX domain containing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2925011/11SPX domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29222NANA3+16573418..16575700retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29224NANA3+16576343..16578548retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29230NANA3+16579344..16579685retrotransposon protein, putative, unclassified
LOC_Os03g29240Os.6150.1.S1_s_at11/113+16583311..16586842PDI, putative, expressed
LOC_Os03g29244OsAffx.3360.1.S1_at11/113+16589202..16589525hypothetical protein
LOC_Os03g29250OsAffx.13105.1.S1_at11/113+16600081..16600913SPX domain-containing protein, putative, expressed
LOC_Os03g29250Os.51747.1.S1_x_at1/113+16600081..16600913SPX domain-containing protein, putative, expressed
LOC_Os03g29260Os.183.1.S1_at9/113+16609096..16613259EF-1 guanine nucleotide exchange domain containing protein, expressed
LOC_Os03g29270OsAffx.13106.1.S1_at11/113+16615429..16617649hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13105.1.S1_at--226--4511Chr03:16600234..16600258 (25 bp)
GCCGAGGTCGACAAGTTCAACGCCT
LOC_Os03g29250
OsAffx.13105.1.S1_at--362--4231Chr03:16600235..16600259 (25 bp)
CCGAGGTCGACAAGTTCAACGCCTT
LOC_Os03g29250
OsAffx.13105.1.S1_at--791--6171Chr03:16600273..16600297 (25 bp)
GAGGAGGACTTCGTCATCAGGCAGC
LOC_Os03g29250
OsAffx.13105.1.S1_at--591--951Chr03:16600277..16600300 (24 bp)
AGGACTTCGTCATCAGGCAGCGGGA
LOC_Os03g29250
OsAffx.13105.1.S1_at--555--5691Chr03:16600279..16600300 (22 bp)
GACTTCGTCATCAGGCAGCGGGAGC
LOC_Os03g29250
OsAffx.13105.1.S1_at--694--2051Chr03:16600280..16600300 (21 bp)
ACTTCGTCATCAGGCAGCGGGAGCT
LOC_Os03g29250
OsAffx.13105.1.S1_at--217--9411Chr03:16600283..16600396 (25 bp)
TCGTCATCAGGCAGCGGGAGCTGCA
LOC_Os03g29250
OsAffx.13105.1.S1_at--1020--9391Chr03:16600633..16600657 (25 bp)
TCGTCAGGGACTGCGAGGCCATCAT
LOC_Os03g29250
OsAffx.13105.1.S1_at--1046--9631Chr03:16600636..16600660 (25 bp)
TCAGGGACTGCGAGGCCATCATGGA
LOC_Os03g29250
OsAffx.13105.1.S1_at--537--3471Chr03:16600637..16600661 (25 bp)
CAGGGACTGCGAGGCCATCATGGAC
LOC_Os03g29250
OsAffx.13105.1.S1_at--690--1971Chr03:16600642..16600666 (25 bp)
ACTGCGAGGCCATCATGGACGCCGT
LOC_Os03g29250
Target Sequence 
GCCGAGGTCGACAAGTTCAACGCCTTCTTCCTCGAGCAGGAGGAGGACTTCGTCATCAGGCAGCGGGAGCTGCAGGAGAG
GATCCAGTCGTCGTCGTCGGCGGCGGCGGAGATGGAGGGGCGGGTGCGGAGGGAGGTGGTGGACCTGCACGGGGAGATGG
TGCTGCTGCTCAACTACAGCAGCATCAACTACACGGGGCTCGCCAAGATCCTCAAGAAGTACGACAAGCGCACCGGCGGC
GTGCTCCGCCTCCCCGTCATCGCCGGCGTCCTCCGCCAGCCCTTCTACGCCACCGACCTCCTCTCCAGCCTCGTCAGGGA
CTGCGAGGCCATCATGGACGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis