Browse Element(s) Details


Os.51747.1.S1_x_at

Description gb:AK063600.1
DB_XREF= gi:32973618
TID=Os.51747.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-B10, full insert sequence.
FL= gb:AK063600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g292501/11SPX domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29222NANA3+16573418..16575700retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29224NANA3+16576343..16578548retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29230NANA3+16579344..16579685retrotransposon protein, putative, unclassified
LOC_Os03g29240Os.6150.1.S1_s_at11/113+16583311..16586842PDI, putative, expressed
LOC_Os03g29244OsAffx.3360.1.S1_at11/113+16589202..16589525hypothetical protein
LOC_Os03g29250OsAffx.13105.1.S1_at11/113+16600081..16600913SPX domain-containing protein, putative, expressed
LOC_Os03g29250Os.51747.1.S1_x_at1/113+16600081..16600913SPX domain-containing protein, putative, expressed
LOC_Os03g29260Os.183.1.S1_at9/113+16609096..16613259EF-1 guanine nucleotide exchange domain containing protein, expressed
LOC_Os03g29270OsAffx.13106.1.S1_at11/113+16615429..16617649hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51747.1.S1_x_at--683--1732Chr11:20525430..20525454 (25 bp)
ACCATGCAGGAGGTCCGCAGCGGCA
NONE
Os.51747.1.S1_x_at--963--6932Chr11:20525554..20525585 (24 bp)
GTAGTCATCTCACGGCAAATGCCAC
NONE
Os.51747.1.S1_x_at--673--3031Chr03:16600927..16600951 (25 bp)
AATGCCACATATTGCGACGAGCTGC
NONE
Os.51747.1.S1_x_at--1000--8251Chr03:16600980..16601004 (25 bp)
GGCAGCAAATTGAAATCGAAATCGA
NONE
Os.51747.1.S1_x_at--96--4910Chr11:15337676..15337713 (25 bp)
ATCTGTAATGTTGTCTTTCTCTTTT
NONE
Os.51747.1.S1_x_at--779--7451Chr03:16601065..16601089 (25 bp)
GTGTGTTTTTATCATAGTTTCTCTA
NONE
Os.51747.1.S1_x_at--202--1211Chr03:16601080..16601104 (25 bp)
AGTTTCTCTAACTAATAGGAGTAGT
NONE
Os.51747.1.S1_x_at--1146--3171Chr03:16601126..16601150 (25 bp)
CAATACCAATGGTTCTTGATGGCCA
NONE
Os.51747.1.S1_x_at--398--10731Chr03:16601141..16601165 (25 bp)
TTGATGGCCATAACTAAGAAATACT
NONE
Os.51747.1.S1_x_at--103--10051Chr03:16601171..16601195 (25 bp)
TAGTACTAGATTGCACATCACAGGT
NONE
Os.51747.1.S1_x_at--1154--2011Chr03:16601175..16601199 (25 bp)
ACTAGATTGCACATCACAGGTGCTC
NONE
Target Sequence 
ACCATGCAGGAGGTCCGCAGCGGCAGCTCCACCTACGGCCACTTCTCCCTCCCGCCGATGACCCCGCTGCCCGACTCCGA
CTGGCTCATCCAGTCCGTCCAGCCGCCGCCGCCGCCGCCGCCGTCGTCGCCGCTCATCATCCCCACGTAGTCATCTCACG
GCAAATGCCACATATTGCGACGAGCTGCAACATTGTCAAATTTTTTTTTCTTCTTTTGGCAGCAAATTGAAATCGAAATC
GAAAAGAACAGACATGTAATTACAAATCTGTAATGTTGTCTTTCTCTTTTTGTTTTTTTGGTGTGTGTTTTTATCATAGT
TTCTCTAACTAATAGGAGTAGTAAATAATGTAACGAATGAGATCAATACCAATGGTTCTTGATGGCCATAACTAAGAAAT
ACTAGTATTAGTACTAGATTGCACATCACAGGTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51747.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis