Browse Element(s) Details


Os.6267.1.S1_at

Description gb:AK121702.1
DB_XREF= gi:37991325
TID=Os.6267.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs D22616(C0561),AU098311(C0735)~putative 60S ribosomal protein L44 (OJ1047_A06.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073H17, full insert sequence.
FL= gb:AK121702.1 gb:AK063789.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2674011/1160S ribosomal protein L44, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26700Os.18694.1.S1_at11/117+15420165..15423516Brain protein 44, putative, expressed
LOC_Os07g26700Os.10664.1.S1_at1/117+15420165..15423516Brain protein 44, putative, expressed
LOC_Os07g26710OsAffx.16427.1.S1_at11/117+15433836..15434484hypothetical protein
LOC_Os07g26720OsAffx.22367.1.S1_at11/117+15439195..15440486response regulator, putative, expressed
LOC_Os07g26730OsAffx.28605.1.S1_at11/117+15442249..15445052hypothetical protein
LOC_Os07g26740Os.6267.1.S1_at11/117+15447167..1544971760S ribosomal protein L44, putative, expressed
LOC_Os07g26750OsAffx.16428.1.S1_at11/117+15450256..15450810expressed protein
LOC_Os07g26760OsAffx.28606.1.S1_x_at11/117+15458078..15458469hypothetical protein
LOC_Os07g26760OsAffx.28606.1.S1_at11/117+15458078..15458469hypothetical protein
LOC_Os07g26770NANA7+15459736..15460137hypothetical protein
LOC_Os07g26780NANA7+15464451..15472079retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6267.1.S1_at--1078--3291Chr07:15448941..15448965 (25 bp)
CACAAGGTTACCCAGTACAAGAAAG
LOC_Os07g26740
Os.6267.1.S1_at--523--2931Chr07:15448963..15448987 (25 bp)
AAGGAAAGGATAGCCTTTCTGCTCA
LOC_Os07g26740
Os.6267.1.S1_at--736--4451Chr07:15448975..15448999 (25 bp)
GCCTTTCTGCTCAGGGGAAGCGTCG
LOC_Os07g26740
Os.6267.1.S1_at--772--7611Chr07:15448989..15449013 (25 bp)
GGGAAGCGTCGTTATGACCGCAAGC
LOC_Os07g26740
Os.6267.1.S1_at--226--5411Chr07:15448991..15449015 (25 bp)
GAAGCGTCGTTATGACCGCAAGCAG
LOC_Os07g26740
Os.6267.1.S1_at--1003--2751Chr07:15449174..15449198 (25 bp)
AAGACAACAAAGAAGATCGTTCTGA
LOC_Os07g26740
Os.6267.1.S1_at--45--2751Chr07:15449183..15449207 (25 bp)
AAGAAGATCGTTCTGAAGCTGCAGT
LOC_Os07g26740
Os.6267.1.S1_at--302--2811Chr07:15449186..15449210 (25 bp)
AAGATCGTTCTGAAGCTGCAGTGCC
LOC_Os07g26740
Os.6267.1.S1_at--735--6391Chr07:15449188..15449212 (25 bp)
GATCGTTCTGAAGCTGCAGTGCCAG
LOC_Os07g26740
Os.6267.1.S1_at--231--511Chr07:15449189..15449213 (25 bp)
ATCGTTCTGAAGCTGCAGTGCCAGA
LOC_Os07g26740
Os.6267.1.S1_at--394--4411Chr07:15449443..15449467 (25 bp)
GCCAGGAGTTAGCATTAAGAATGTT
LOC_Os07g26740
Target Sequence 
CACAAGGTTACCCAGTACAAGAAAGGAAAGGATAGCCTTTCTGCTCAGGGGAAGCGTCGTTATGACCGCAAGCAGTCAGG
ATATGGTGGGCAGACAAAGCCTGTTTTNCACAAGAAGGCCAAGACAACAAAGAAGATCGTTCTGAAGCTGCAGTGCCAGA
GCTGCAAGCACTACTCTCAGCACCCGATCAAGAGGTGCAAGCACTTTGAAATCGGTGGNGACAAGAANGGCAAGGGAACT
TCACTCTTCTAAGATGCTNATATTGCCCTGTTCNCCAATTCTCNNNNNNNNTGCCAGGAGTTAGCATTAAGAATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis