Browse Element(s) Details


OsAffx.28605.1.S1_at

Description tigr:9635.m02575
TID=OsAffx.28605.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2673011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26700Os.18694.1.S1_at11/117+15420165..15423516Brain protein 44, putative, expressed
LOC_Os07g26700Os.10664.1.S1_at1/117+15420165..15423516Brain protein 44, putative, expressed
LOC_Os07g26710OsAffx.16427.1.S1_at11/117+15433836..15434484hypothetical protein
LOC_Os07g26720OsAffx.22367.1.S1_at11/117+15439195..15440486response regulator, putative, expressed
LOC_Os07g26730OsAffx.28605.1.S1_at11/117+15442249..15445052hypothetical protein
LOC_Os07g26740Os.6267.1.S1_at11/117+15447167..1544971760S ribosomal protein L44, putative, expressed
LOC_Os07g26750OsAffx.16428.1.S1_at11/117+15450256..15450810expressed protein
LOC_Os07g26760OsAffx.28606.1.S1_x_at11/117+15458078..15458469hypothetical protein
LOC_Os07g26760OsAffx.28606.1.S1_at11/117+15458078..15458469hypothetical protein
LOC_Os07g26770NANA7+15459736..15460137hypothetical protein
LOC_Os07g26780NANA7+15464451..15472079retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28605.1.S1_at--440--4371Chr07:15443116..15443139 (24 bp)
CCACATCTGACCTTCCTTAAGATTA
LOC_Os07g26730
OsAffx.28605.1.S1_at--75--9791Chr07:15442792..15443122 (25 bp)
TAAGATTACATTCCCTTGTCTGCAT
LOC_Os07g26730
OsAffx.28605.1.S1_at--532--6211Chr07:15442696..15442720 (25 bp)
GAGGCTGCGCATACAGGGAGCTCAT
LOC_Os07g26730
OsAffx.28605.1.S1_at--14--5491Chr07:15442644..15442668 (25 bp)
GAACTTTCAGGCTCGCTACGTATCA
LOC_Os07g26730
OsAffx.28605.1.S1_at--1121--9931Chr07:15442628..15442652 (25 bp)
TACGTATCAACGGAAGCCACTCTCT
LOC_Os07g26730
OsAffx.28605.1.S1_at--328--9511Chr07:15442606..15442630 (25 bp)
TCTCGCGAGCATTTCAGACCTGTAT
LOC_Os07g26730
OsAffx.28605.1.S1_at--406--1371Chr07:15442573..15442597 (25 bp)
AGAGCTCTATGTAGCTGACTGCCCT
LOC_Os07g26730
OsAffx.28605.1.S1_at--1112--2271Chr07:15442525..15442549 (25 bp)
AAATGCGTTGAAGTGGCTGTACCTC
LOC_Os07g26730
OsAffx.28605.1.S1_at--13--6251Chr07:15442489..15442513 (25 bp)
GATGGACTGTATCCCGATGTGGCTC
LOC_Os07g26730
OsAffx.28605.1.S1_at--67--5751Chr07:15442428..15442452 (25 bp)
GACGGCCTCGAGTTGGAGCTGCATT
LOC_Os07g26730
OsAffx.28605.1.S1_at--1008--8671Chr07:15442304..15442328 (25 bp)
TGTGCTATTCGAGACACCCAGTTAG
LOC_Os07g26730
Target Sequence 
CCACATCTGACCTTCCTTAAGATTACATTCCCTTGTCTGCATCAACTTGAACTGAAGGACTGTTCAAAACTCAGAGCTCT
ACCTGAACAGCTGAAGCATGCCCCCAAGATGCAGAGGCTGCGCATACAGGGAGCTCATGCACTGAAGAAGATCAAGAACC
TTCATGAACTTTCAGGCTCGCTACGTATCAACGGAAGCCACTCTCTCGCGAGCATTTCAGACCTGTATCAGATCAAAGAG
CTCTATGTAGCTGACTGCCCTGCACTGCAGTTTGTGAACAATCTAAATGCGTTGAAGTGGCTGTACCTCGAAGATGAGAC
GATGGACTGTATCCCGATGTGGCTCTCGAGGCTGGCAGAGAGTGGTGAGCAAGCCGGTGAGGACGGCCTCGAGTTGGAGC
TGCATTGCAGCACTGAAATGCTCGATAGGTGGCTAATTGAGCGTCAGGATTGGACAATCCTGGAGAGGTTCACAAGTGTT
GCTGCATATTGCAAAGAAGATTACATGTGCTATTCGAGACACCCAGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis