Browse Element(s) Details


OsAffx.22367.1.S1_at

Description tigr:9635.m02574
TID=OsAffx.22367.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Response regulator receiver domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2672011/11response regulator, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26700Os.18694.1.S1_at11/117+15420165..15423516Brain protein 44, putative, expressed
LOC_Os07g26700Os.10664.1.S1_at1/117+15420165..15423516Brain protein 44, putative, expressed
LOC_Os07g26710OsAffx.16427.1.S1_at11/117+15433836..15434484hypothetical protein
LOC_Os07g26720OsAffx.22367.1.S1_at11/117+15439195..15440486response regulator, putative, expressed
LOC_Os07g26730OsAffx.28605.1.S1_at11/117+15442249..15445052hypothetical protein
LOC_Os07g26740Os.6267.1.S1_at11/117+15447167..1544971760S ribosomal protein L44, putative, expressed
LOC_Os07g26750OsAffx.16428.1.S1_at11/117+15450256..15450810expressed protein
LOC_Os07g26760OsAffx.28606.1.S1_x_at11/117+15458078..15458469hypothetical protein
LOC_Os07g26760OsAffx.28606.1.S1_at11/117+15458078..15458469hypothetical protein
LOC_Os07g26770NANA7+15459736..15460137hypothetical protein
LOC_Os07g26780NANA7+15464451..15472079retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000160biological_processtwo-component signal transduction system (phosphorelay)
GO:0006950biological_processresponse to stress
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009736biological_processcytokinin mediated signaling
GO:0010017biological_processred or far red light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0000156molecular_functiontwo-component response regulator activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22367.1.S1_at--1041--691Chr07:15439304..15439328 (25 bp)
ATGAGATGAAGAGTGTCGTCGTCAA
LOC_Os07g26720
OsAffx.22367.1.S1_at--438--9031Chr07:15439361..15439385 (25 bp)
TGCACGACAACGCATCGGCAGAGGA
LOC_Os07g26720
OsAffx.22367.1.S1_at--143--4491Chr07:15439464..15439488 (25 bp)
GCCGTACGTGATGGCCGTCGATGAC
LOC_Os07g26720
OsAffx.22367.1.S1_at--585--6011Chr07:15439731..15439842 (25 bp)
GAGATATTGGGCTCGGAACCTAATG
LOC_Os07g26720
OsAffx.22367.1.S1_at--747--1291Chr07:15439876..15439900 (25 bp)
AGATGACCGGGTACGACCTGCTCAA
LOC_Os07g26720
OsAffx.22367.1.S1_at--248--371Chr07:15440211..15440231 (21 bp)
ATCAAGGAATCGTCTGAGCTGAAGC
LOC_Os07g26720
OsAffx.22367.1.S1_at--426--4011Chr07:15440217..15440241 (25 bp)
CGTCTGAGCTGAAGCAGATCCCGGT
LOC_Os07g26720
OsAffx.22367.1.S1_at--410--9311Chr07:15440235..15440259 (25 bp)
TCCCGGTGGTGATAATGTCGTCAGA
LOC_Os07g26720
OsAffx.22367.1.S1_at--314--771Chr07:15440249..15440273 (25 bp)
ATGTCGTCAGAGAACGTGCCCACAA
LOC_Os07g26720
OsAffx.22367.1.S1_at--884--5451Chr07:15440260..15440283 (24 bp)
GAACGTGCCCACAAGGATCAGCAGA
LOC_Os07g26720
OsAffx.22367.1.S1_at--956--2731Chr07:15440407..15440431 (25 bp)
AAGAAGGCGCGGAGGACTTCCTGCT
LOC_Os07g26720
Target Sequence 
ATGAGATGAAGAGTGTCGTCGTCAAGGGCTGGACGAGGATGGCGCAAGTGGTGCCGCTGCACGACAACGCATCGGCAGAG
GACGACGACGACGACGAAGAAGACGATGACGAAGATGATGATGATGATGACGACGAGGACGATGAGGAGGAGGCGGCGCC
GCCGTACGTGATGGCCGTCGATGACAGCTCCGTCGACCGCGCCGTCATCACGGCGCTGCTCCGGCGATCCAAGTACCGCG
NNNNNNNNNNNNACAGTGGGAAAAGGGCGCTGGAGATATTGGGCTCGGAACCTAATGTGAGCATGATCATCACGGACTAC
TGGATGCCGGAGATGACCGGGTACGACCTGCTCAAGAAGATCAAGGAATCGTCTGAGCTGAAGCAGATCCCGGTGGTGAT
AATGTCGTCAGAGAACGTGCCCACAAGGATCAGCAGATGCTTGGAAGAAGGCGCGGAGGACTTCCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis